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Pymol-Scripts / Pymol-script-repo

Collected scripts for Pymol
http://www.pymolwiki.org/index.php/Git_intro
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Create pyanm.py #60

Closed ywanghk closed 10 years ago

ywanghk commented 10 years ago

Source code for pymol plugin PyANM

tlinnet commented 10 years ago

Hi! Does looks really cool. Have you made a wiki page for it?

Like: http://www.pymolwiki.org/index.php/Pyanm

ywanghk commented 10 years ago

Hi,

Just done with wiki page at here: http://www.pymolwiki.org/index.php/PyANM

Thanks!

On Sun, Oct 19, 2014 at 3:05 PM, Troels E. Linnet notifications@github.com wrote:

Merged #60 https://github.com/Pymol-Scripts/Pymol-script-repo/pull/60.

— Reply to this email directly or view it on GitHub https://github.com/Pymol-Scripts/Pymol-script-repo/pull/60#event-180554673 .

Yuan Wang Research Assistant Bioinformatics and Computational Biology 111 Lab and Office Building Iowa State University, 50010

tlinnet commented 10 years ago

Hi, this looks really great!

I put a link from the front page (http://www.pymolwiki.org/) to the plugin site.

Best Troels

Troels Emtekær Linnet

2014-10-20 3:56 GMT+02:00 ywanghk notifications@github.com:

Hi,

Just done with wiki page at here: http://www.pymolwiki.org/index.php/PyANM

Thanks!

On Sun, Oct 19, 2014 at 3:05 PM, Troels E. Linnet < notifications@github.com> wrote:

Merged #60 https://github.com/Pymol-Scripts/Pymol-script-repo/pull/60.

— Reply to this email directly or view it on GitHub < https://github.com/Pymol-Scripts/Pymol-script-repo/pull/60#event-180554673>

.

Yuan Wang Research Assistant Bioinformatics and Computational Biology 111 Lab and Office Building Iowa State University, 50010

— Reply to this email directly or view it on GitHub https://github.com/Pymol-Scripts/Pymol-script-repo/pull/60#issuecomment-59675615 .

tlinnet commented 10 years ago

Is there any reference to articles, using this method?

Best Troels

Troels Emtekær Linnet

2014-10-20 9:12 GMT+02:00 Troels Emtekær Linnet tlinnet@gmail.com:

Hi, this looks really great!

I put a link from the front page (http://www.pymolwiki.org/) to the plugin site.

Best Troels

Troels Emtekær Linnet

2014-10-20 3:56 GMT+02:00 ywanghk notifications@github.com:

Hi,

Just done with wiki page at here: http://www.pymolwiki.org/index.php/PyANM

Thanks!

On Sun, Oct 19, 2014 at 3:05 PM, Troels E. Linnet < notifications@github.com> wrote:

Merged #60 https://github.com/Pymol-Scripts/Pymol-script-repo/pull/60.

— Reply to this email directly or view it on GitHub < https://github.com/Pymol-Scripts/Pymol-script-repo/pull/60#event-180554673>

.

Yuan Wang Research Assistant Bioinformatics and Computational Biology 111 Lab and Office Building Iowa State University, 50010

— Reply to this email directly or view it on GitHub https://github.com/Pymol-Scripts/Pymol-script-repo/pull/60#issuecomment-59675615 .

ywanghk commented 10 years ago

Thanks for putting the plugin on the front page, that looks wonderful!

The two models this plugin can build are from these two papers:

Atilgan, A. R., Durell, S. R., Jernigan, R. L., Demirel, M. C., Keskin, O., & Bahar, I. (2001). Anisotropy of fluctuation dynamics of proteins with an elastic network model. Biophysical journal, 80(1), 505-515.

Yang, L., Song, G., & Jernigan, R. L. (2009). Protein elastic network models and the ranges of cooperativity. Proceedings of the National Academy of Sciences, 106(30), 12347-12352.

I did include these two papers in the plugin's wiki page, do you think I need to have them stand out as references?

Best,

Yuan

On Mon, Oct 20, 2014 at 2:14 AM, Troels E. Linnet notifications@github.com wrote:

Is there any reference to articles, using this method?

Best Troels

Troels Emtekær Linnet

2014-10-20 9:12 GMT+02:00 Troels Emtekær Linnet tlinnet@gmail.com:

Hi, this looks really great!

I put a link from the front page (http://www.pymolwiki.org/) to the plugin site.

Best Troels

Troels Emtekær Linnet

2014-10-20 3:56 GMT+02:00 ywanghk notifications@github.com:

Hi,

Just done with wiki page at here: http://www.pymolwiki.org/index.php/PyANM

Thanks!

On Sun, Oct 19, 2014 at 3:05 PM, Troels E. Linnet < notifications@github.com> wrote:

Merged #60 < https://github.com/Pymol-Scripts/Pymol-script-repo/pull/60>.

— Reply to this email directly or view it on GitHub <

https://github.com/Pymol-Scripts/Pymol-script-repo/pull/60#event-180554673>

.

Yuan Wang Research Assistant Bioinformatics and Computational Biology 111 Lab and Office Building Iowa State University, 50010

— Reply to this email directly or view it on GitHub < https://github.com/Pymol-Scripts/Pymol-script-repo/pull/60#issuecomment-59675615>

.

— Reply to this email directly or view it on GitHub https://github.com/Pymol-Scripts/Pymol-script-repo/pull/60#issuecomment-59691773 .

Yuan Wang Research Assistant Bioinformatics and Computational Biology 111 Lab and Office Building Iowa State University, 50010