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AttributeError: 'module' object has no attribute 'TupleProxy' #9

Open emucaki opened 5 years ago

emucaki commented 5 years ago

I have finally installed all dependencies (including python packages pybedtools and ghmm), and I get the following error when attempting to run the program:

python pipeclip.py -i ERR_TopHat_Aligned.bam -o ERR-NoRepeatRemoval -c 3 -l 25 -m 2 -r 0 -M 0.05 -C 0.05 -s hg19

Traceback (most recent call last): File "pipeclip.py", line 13, in from lib import File "/project/xxxxx/emucaki/RNPS1-FASTQ/PIPE-CLIP-master/lib/init.py", line 2, in import Alignment File "/project/xxxxx/emucaki/RNPS1-FASTQ/PIPE-CLIP-master/lib/Alignment.py", line 6, in import Enrich File "/project/xxxxx/emucaki/RNPS1-FASTQ/PIPE-CLIP-master/lib/Enrich.py", line 15, in from pysam import AttributeError: 'module' object has no attribute 'TupleProxy'

Any help would be most appreciated.

jalalsiddiqui commented 5 years ago

I am having the same error with this. I would appreciate any help that I can get.

jalalsiddiqui commented 5 years ago

I also have made an issue with pysam if this can help

https://github.com/pysam-developers/pysam/issues/809

xiangrong7 commented 5 years ago

I am having the same error with this, I would appreciate any help that I can get,too