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QCDIS / NaaVRE-flavors

Flavors of NaaVRE
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Add `git` to all flavors #33

Closed gpelouze closed 2 months ago

gpelouze commented 2 months ago

If a cell contains

name: venv
channels:
  - conda-forge
dependencies:
  - pip
  - python>=3.8
  - nbconvert
  - pip:
    - git+https://github.com/xyz/abcgit

the containerization fails with

#12 23.07 Installing pip packages: git+https://github.com/xyz/abc.git
#12 23.72 Collecting git+https://github.com/xyz/abc.git (from -r /tmp/mambafLLMJROqlZM (line 1))
#12 23.72   Cloning https://github.com/xyz/abc.git to ./pip-req-build-0ajqy1b_
#12 23.72   ERROR: Error [Errno 2] No such file or directory: 'git' while executing command git version
#12 23.72 ERROR: Cannot find command 'git' - do you have 'git' installed and in your PATH?
#12 23.87 critical libmamba pip failed to install packages

unless the base image contains git.

This is not the case anywhere except with the laserfarm flavor.

To support pip installs from git sources, we need to add git to the conda environments of all flavors.