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Build radar data processing base docker #2

Closed skoulouzis closed 2 years ago

skoulouzis commented 2 years ago

Get the code form https://gitlab.com/BerendWijers/radar_cluster and build docker base image

skoulouzis commented 2 years ago

We needed the tools package from the radar cluster. They are built as tar and we need to copy them to docker and build

skoulouzis commented 2 years ago

Got error QCDIS/lifewatch-notebooks#1

skoulouzis commented 2 years ago

We try to build a base image with vol2bird https://github.com/QCDIS/NaaVRE/issues/112. Using this image: https://github.com/QCDIS/NaaVRE/blob/c734bdf2c8f5fbf462d4c316259eb1f6df0c928d/docker/Dockerfile-vol2bird We get an error: 

Installing iris2odim....Cloning into 'iris2odim'...
Already up to date.
Note: switching to '376ae90cf93baafe225e4d394f634fd178e9a238'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 376ae90 added a comment
fatal: No names found, cannot describe anything.
IRIS2ODIM is at version: 376ae90cf93baafe225e4d394f634fd178e9a238
./setup: 401: patch: not found
(RAVE) Could not patch system for building
The command '/bin/bash -o pipefail -c ./setup install' returned a non-zero code: 127
BerendWijers commented 2 years ago

Is this done by the vol2bird installer?

skoulouzis commented 2 years ago

Is this done by the vol2bird installer?

Yes, following https://github.com/adokter/vol2birdinstall

BerendWijers commented 2 years ago

Ok, I havent tried the same myself. Could you let me know what OS the container has that you are attempting to install it in?

Edit: There's a prefab docker image, I'm not sure if that would be of help?

https://github.com/adokter/vol2bird/tree/master/docker

skoulouzis commented 2 years ago

's a prefab docker image, I'm not sure if that would be of help?

DISTRIB_ID=Ubuntu DISTRIB_RELEASE=20.04 DISTRIB_CODENAME=focal DISTRIB_DESCRIPTION="Ubuntu 20.04.3 LTS" NAME="Ubuntu" VERSION="20.04.3 LTS (Focal Fossa)" ID=ubuntu ID_LIKE=debian PRETTY_NAME="Ubuntu 20.04.3 LTS" VERSION_ID="20.04" HOME_URL="https://www.ubuntu.com/" SUPPORT_URL="https://help.ubuntu.com/" BUG_REPORT_URL="https://bugs.launchpad.net/ubuntu/" PRIVACY_POLICY_URL="https://www.ubuntu.com/legal/terms-and-policies/privacy-policy" VERSION_CODENAME=focal UBUNTU_CODENAME=focal

BerendWijers commented 2 years ago

Okay, so I've not used the installer previously (It's rather new). Perhaps we can make an issue at their git? You probably know your setup better than I do. Adriaan Dokter (Maintainer) should be quite responsive.

BerendWijers commented 2 years ago

Considering we havent heard anything from Adokter about the fix for the vol2bird installer yet, would it be worthwhile to get the vol2bird docker container running?

skoulouzis commented 2 years ago

Ok, I havent tried the same myself. Could you let me know what OS the container has that you are attempting to install it in?

Edit: There's a prefab docker image, I'm not sure if that would be of help?

https://github.com/adokter/vol2bird/tree/master/docker

Looks like with a few tweaks we can install vol2bird using this Dockerfile

skoulouzis commented 2 years ago

Jupyter Docker image is built: https://hub.docker.com/repository/docker/qcdis/n-a-a-vre-vol2bird