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QData / spacetimeformer

Multivariate Time Series Forecasting with efficient Transformers. Code for the paper "Long-Range Transformers for Dynamic Spatiotemporal Forecasting."
https://arxiv.org/abs/2109.12218
MIT License
769 stars 182 forks source link

AttributeError: module 'tqdm' has no attribute 'auto' #74

Open PeterAyad opened 1 year ago

PeterAyad commented 1 year ago

When I run the following command

python train.py linear ettm1 --context_points 288 --target_points 96 --run_name linear_ettm1_regression --gpus 0 --use_seasonal_decomp --linear_window 288 --data_path /path/to/ETTm1.csv

I get this error

Traceback (most recent call last): File "train.py", line 8, in import pytorch_lightning as pl File "/home/ubuntu/miniconda3/envs/spacetimeformer/lib/python3.8/site-packages/pytorch_lightning/init.py", line 30, in from pytorch_lightning.callbacks import Callback # noqa: E402 File "/home/ubuntu/miniconda3/envs/spacetimeformer/lib/python3.8/site-packages/pytorch_lightning/callbacks/init.py", line 14, in from pytorch_lightning.callbacks.base import Callback File "/home/ubuntu/miniconda3/envs/spacetimeformer/lib/python3.8/site-packages/pytorch_lightning/callbacks/base.py", line 25, in from pytorch_lightning.utilities.types import STEP_OUTPUT File "/home/ubuntu/miniconda3/envs/spacetimeformer/lib/python3.8/site-packages/pytorch_lightning/utilities/types.py", line 26, in from torchmetrics import Metric File "/home/ubuntu/miniconda3/envs/spacetimeformer/lib/python3.8/site-packages/torchmetrics/init.py", line 14, in from torchmetrics import functional # noqa: E402 File "/home/ubuntu/miniconda3/envs/spacetimeformer/lib/python3.8/site-packages/torchmetrics/functional/init.py", line 60, in from torchmetrics.functional.text.bert import bert_score File "/home/ubuntu/miniconda3/envs/spacetimeformer/lib/python3.8/site-packages/torchmetrics/functional/text/bert.py", line 247, in def _get_progress_bar(dataloader: DataLoader, verbose: bool = False) -> Union[DataLoader, tqdm.auto.tqdm]: AttributeError: module 'tqdm' has no attribute 'auto'

I installed it using the commands in the readme

git clone https://github.com/QData/spacetimeformer.git
cd spacetimeformer
conda create -n spacetimeformer python==3.8
conda activate spacetimeformer
pip install -r requirements.txt
pip install -e .

and this is my pip freeze

absl-py==1.4.0
aiohttp==3.8.4
aiosignal==1.3.1
antlr4-python3-runtime==4.9.3
appdirs==1.4.4
async-timeout==4.0.2
attrs==23.1.0
axial-positional-embedding==0.2.1
cachetools==5.3.1
certifi==2023.5.7
cftime==1.6.2
chardet==5.1.0
charset-normalizer==3.1.0
click==8.1.3
cmake==3.26.4
cmdstanpy==0.9.68
contourpy==1.1.0
convertdate==2.4.0
cycler==0.11.0
Cython==0.29.35
docker-pycreds==0.4.0
einops==0.6.1
filelock==3.12.2
fonttools==4.40.0
frozenlist==1.3.3
fsspec==2023.6.0
gitdb==4.0.10
GitPython==3.1.31
google-auth==2.21.0
google-auth-oauthlib==1.0.0
grpcio==1.56.0
idna==3.4
importlib-metadata==6.7.0
importlib-resources==5.12.0
Jinja2==3.1.2
joblib==1.3.1
kiwisolver==1.4.4
lit==16.0.6
local-attention==1.8.6
Markdown==3.4.3
MarkupSafe==2.1.3
matplotlib==3.7.1
mpmath==1.3.0
multidict==6.0.4
netCDF4==1.6.4
networkx==3.1
numpy==1.24.4
nvidia-cublas-cu11==11.10.3.66
nvidia-cuda-cupti-cu11==11.7.101
nvidia-cuda-nvrtc-cu11==11.7.99
nvidia-cuda-runtime-cu11==11.7.99
nvidia-cudnn-cu11==8.5.0.96
nvidia-cufft-cu11==10.9.0.58
nvidia-curand-cu11==10.2.10.91
nvidia-cusolver-cu11==11.4.0.1
nvidia-cusparse-cu11==11.7.4.91
nvidia-nccl-cu11==2.14.3
nvidia-nvtx-cu11==11.7.91
nystrom-attention==0.0.11
oauthlib==3.2.2
omegaconf==2.3.0
opencv-python==4.8.0.74
opt-einsum==3.3.0
packaging==23.1
pandas==2.0.3
pathtools==0.1.2
performer-pytorch==1.1.4
Pillow==9.5.0
protobuf==4.23.3
psutil==5.9.5
pyasn1==0.5.0
pyasn1-modules==0.3.0
pyDeprecate==0.3.2
PyMeeus==0.5.12
pyparsing==3.1.0
pystan==2.19.1.1
python-dateutil==2.8.2
pytorch-lightning==1.6.0
pytz==2023.3
PyYAML==6.0
requests==2.31.0
requests-oauthlib==1.3.1
rsa==4.9
scikit-learn==1.3.0
scipy==1.10.1
seaborn==0.12.2
sentry-sdk==1.26.0
setproctitle==1.3.2
six==1.16.0
smmap==5.0.0
-e git+https://github.com/QData/spacetimeformer.git@bcf953fdac56f6c174041f86ecaecc8c010710e3#egg=spacetimeformer
sympy==1.12
tensorboard==2.13.0
tensorboard-data-server==0.7.1
threadpoolctl==3.1.0
torch==2.0.1
torchmetrics==0.5.1
tqdm==4.65.0
triton==2.0.0
typing_extensions==4.7.0
tzdata==2023.3
ujson==5.8.0
urllib3==1.26.16
wandb==0.15.4
Werkzeug==2.3.6
yarl==1.9.2
zipp==3.15.0

How to fix this error?

pdy265 commented 1 year ago

I have met the same problem,you need chang to special version of tqdm.

Harishu1998 commented 1 year ago

@pdy265 What is this special Version? Could you please explain how you fixed it? I have the same error as well

Harishu1998 commented 1 year ago

when I replaced tqdm.auto.tqdm with tqdm.tqdm it worked

LundinMachine commented 8 months ago

@Harishu1998 where did you replace tqdm.auto.tqdm. A grep search did not find auto, just tqdm in s4_model/extensions/cauchy/tuner.py

LundinMachine commented 8 months ago

Alternatively, what version did you use?

jakegrigsby commented 8 months ago

My conda env has the same torchmetrics, tqdm ,and lightning version as the pip freeze above but I wasn't able to replicate this... the command trains fine. It also works on newer versions of tqdm (4.66). It looks like torchmetrics is the one calling tqdm here, but this version of tqdm does not have tqdm.auto

Yashaswini-Srirangarajan commented 8 months ago

Still having the same issue.

LundinMachine commented 8 months ago

What worked for me is to first install tqdm, then pip the remaining requirements

pip install tqdm>4.66
pip install -r requirements.txt
pip install -e .

Here is my pip freeze in case useful. 

absl-py==1.4.0
aiohttp==3.9.1
aiosignal==1.3.1
alabaster==0.7.13
albumentations==1.3.1
altair==4.2.2
antlr4-python3-runtime==4.9.3
anyio==3.7.1
appdirs==1.4.4
argon2-cffi==23.1.0
argon2-cffi-bindings==21.2.0
array-record==0.5.0
arviz==0.15.1
astropy==5.3.4
astunparse==1.6.3
async-timeout==4.0.3
atpublic==4.0
attrs==23.1.0
audioread==3.0.1
autograd==1.6.2
axial-positional-embedding==0.2.1
Babel==2.14.0
backcall==0.2.0
beautifulsoup4==4.11.2
bidict==0.22.1
bigframes==0.17.0
bleach==6.1.0
blinker==1.4
blis==0.7.11
blosc2==2.0.0
bokeh==3.3.2
bqplot==0.12.42
branca==0.7.0
build==1.0.3
CacheControl==0.13.1
cachetools==5.3.2
catalogue==2.0.10
certifi==2023.11.17
cffi==1.16.0
cftime==1.6.3
chardet==5.2.0
charset-normalizer==3.3.2
chex==0.1.7
click==8.1.7
click-plugins==1.1.1
cligj==0.7.2
cloudpickle==2.2.1
cmake==3.27.9
cmdstanpy==0.9.68
colorcet==3.0.1
colorlover==0.3.0
colour==0.1.5
community==1.0.0b1
confection==0.1.4
cons==0.4.6
contextlib2==21.6.0
contourpy==1.2.0
convertdate==2.4.0
cryptography==41.0.7
cufflinks==0.17.3
cupy-cuda12x==12.2.0
cvxopt==1.3.2
cvxpy==1.3.2
cycler==0.12.1
cymem==2.0.8
Cython==3.0.6
dask==2023.8.1
datascience==0.17.6
db-dtypes==1.2.0
dbus-python==1.2.18
debugpy==1.6.6
decorator==4.4.2
defusedxml==0.7.1
diskcache==5.6.3
distributed==2023.8.1
distro==1.7.0
dlib==19.24.2
dm-tree==0.1.8
docker-pycreds==0.4.0
docutils==0.18.1
dopamine-rl==4.0.6
duckdb==0.9.2
earthengine-api==0.1.384
easydict==1.11
ecos==2.0.12
editdistance==0.6.2
eerepr==0.0.4
einops==0.7.0
en-core-web-sm @ https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-3.6.0/en_core_web_sm-3.6.0-py3-none-any.whl#sha256=83276fc78a70045627144786b52e1f2728ad5e29e5e43916ec37ea9c26a11212
entrypoints==0.4
et-xmlfile==1.1.0
etils==1.6.0
etuples==0.3.9
exceptiongroup==1.2.0
fastai==2.7.13
fastcore==1.5.29
fastdownload==0.0.7
fastjsonschema==2.19.0
fastprogress==1.0.3
fastrlock==0.8.2
filelock==3.13.1
fiona==1.9.5
firebase-admin==5.3.0
Flask==2.2.5
flatbuffers==23.5.26
flax==0.7.5
folium==0.14.0
fonttools==4.46.0
frozendict==2.3.10
frozenlist==1.4.1
fsspec==2023.6.0
future==0.18.3
gast==0.5.4
gcsfs==2023.6.0
GDAL==3.4.3
gdown==4.6.6
geemap==0.29.6
gensim==4.3.2
geocoder==1.38.1
geographiclib==2.0
geopandas==0.13.2
geopy==2.3.0
gin-config==0.5.0
gitdb==4.0.11
GitPython==3.1.40
glob2==0.7
google==2.0.3
google-ai-generativelanguage==0.4.0
google-api-core==2.11.1
google-api-python-client==2.84.0
google-auth==2.17.3
google-auth-httplib2==0.1.1
google-auth-oauthlib==1.2.0
google-cloud-aiplatform==1.38.1
google-cloud-bigquery==3.12.0
google-cloud-bigquery-connection==1.12.1
google-cloud-bigquery-storage==2.24.0
google-cloud-core==2.3.3
google-cloud-datastore==2.15.2
google-cloud-firestore==2.11.1
google-cloud-functions==1.13.3
google-cloud-iam==2.13.0
google-cloud-language==2.9.1
google-cloud-resource-manager==1.11.0
google-cloud-storage==2.8.0
google-cloud-translate==3.11.3
google-colab @ file:///colabtools/dist/google-colab-1.0.0.tar.gz#sha256=50fc35e4c51cfe2fb5f940ff90e020374078e5d873c5aee59183a6579adb1cd6
google-crc32c==1.5.0
google-generativeai==0.3.1
google-pasta==0.2.0
google-resumable-media==2.7.0
googleapis-common-protos==1.62.0
googledrivedownloader==0.4
graphviz==0.20.1
greenlet==3.0.2
grpc-google-iam-v1==0.13.0
grpcio==1.60.0
grpcio-status==1.48.2
gspread==3.4.2
gspread-dataframe==3.3.1
gym==0.25.2
gym-notices==0.0.8
h5netcdf==1.3.0
h5py==3.9.0
holidays==0.38
holoviews==1.17.1
html5lib==1.1
httpimport==1.3.1
httplib2==0.22.0
huggingface-hub==0.19.4
humanize==4.7.0
hyperopt==0.2.7
ibis-framework==6.2.0
idna==3.6
imageio==2.31.6
imageio-ffmpeg==0.4.9
imagesize==1.4.1
imbalanced-learn==0.10.1
imgaug==0.4.0
importlib-metadata==7.0.0
importlib-resources==6.1.1
imutils==0.5.4
inflect==7.0.0
iniconfig==2.0.0
install==1.3.5
intel-openmp==2023.2.3
ipyevents==2.0.2
ipyfilechooser==0.6.0
ipykernel==5.5.6
ipyleaflet==0.18.1
ipython==7.34.0
ipython-genutils==0.2.0
ipython-sql==0.5.0
ipytree==0.2.2
ipywidgets==7.7.1
itsdangerous==2.1.2
jax==0.4.23
jaxlib @ https://storage.googleapis.com/jax-releases/cuda12/jaxlib-0.4.23+cuda12.cudnn89-cp310-cp310-manylinux2014_x86_64.whl#sha256=8e42000672599e7ec0ea7f551acfcc95dcdd0e22b05a1d1f12f97b56a9fce4a8
jeepney==0.7.1
jieba==0.42.1
Jinja2==3.1.2
joblib==1.3.2
jsonpickle==3.0.2
jsonschema==4.19.2
jsonschema-specifications==2023.11.2
jupyter-client==6.1.12
jupyter-console==6.1.0
jupyter-server==1.24.0
jupyter_core==5.5.1
jupyterlab-widgets==3.0.9
jupyterlab_pygments==0.3.0
kaggle==1.5.16
kagglehub==0.1.4
keras==2.15.0
keyring==23.5.0
kiwisolver==1.4.5
langcodes==3.3.0
launchpadlib==1.10.16
lazr.restfulclient==0.14.4
lazr.uri==1.0.6
lazy_loader==0.3
libclang==16.0.6
librosa==0.10.1
lida==0.0.10
lightgbm==4.1.0
linkify-it-py==2.0.2
llmx==0.0.15a0
llvmlite==0.41.1
local-attention==1.9.0
locket==1.0.0
logical-unification==0.4.6
lxml==4.9.3
malloy==2023.1067
Markdown==3.5.1
markdown-it-py==3.0.0
MarkupSafe==2.1.3
matplotlib==3.7.1
matplotlib-inline==0.1.6
matplotlib-venn==0.11.9
mdit-py-plugins==0.4.0
mdurl==0.1.2
miniKanren==1.0.3
missingno==0.5.2
mistune==0.8.4
mizani==0.9.3
mkl==2023.2.0
ml-dtypes==0.2.0
mlxtend==0.22.0
more-itertools==10.1.0
moviepy==1.0.3
mpmath==1.3.0
msgpack==1.0.7
multidict==6.0.4
multipledispatch==1.0.0
multitasking==0.0.11
murmurhash==1.0.10
music21==9.1.0
natsort==8.4.0
nbclassic==1.0.0
nbclient==0.9.0
nbconvert==6.5.4
nbformat==5.9.2
nest-asyncio==1.5.8
netCDF4==1.6.5
networkx==3.2.1
nibabel==4.0.2
nltk==3.8.1
notebook==6.5.5
notebook_shim==0.2.3
numba==0.58.1
numexpr==2.8.8
numpy==1.23.5
nystrom-attention==0.0.11
oauth2client==4.1.3
oauthlib==3.2.2
omegaconf==2.3.0
opencv-contrib-python==4.8.0.76
opencv-python==4.8.0.76
opencv-python-headless==4.8.1.78
openpyxl==3.1.2
opt-einsum==3.3.0
optax==0.1.7
orbax-checkpoint==0.4.4
osqp==0.6.2.post8
packaging==23.2
pandas==1.5.3
pandas-datareader==0.10.0
pandas-gbq==0.19.2
pandas-stubs==1.5.3.230304
pandocfilters==1.5.0
panel==1.3.4
param==2.0.1
parso==0.8.3
parsy==2.1
partd==1.4.1
pathlib==1.0.1
pathy==0.10.3
patsy==0.5.4
peewee==3.17.0
performer-pytorch==1.1.4
pexpect==4.9.0
pickleshare==0.7.5
Pillow==9.4.0
pip-tools==6.13.0
platformdirs==4.1.0
plotly==5.15.0
plotnine==0.12.4
pluggy==1.3.0
polars==0.17.3
pooch==1.8.0
portpicker==1.5.2
prefetch-generator==1.0.3
preshed==3.0.9
prettytable==3.9.0
proglog==0.1.10
progressbar2==4.2.0
prometheus-client==0.19.0
promise==2.3
prompt-toolkit==3.0.43
prophet==1.1.5
proto-plus==1.23.0
protobuf==3.20.3
psutil==5.9.5
psycopg2==2.9.9
ptyprocess==0.7.0
py-cpuinfo==9.0.0
py4j==0.10.9.7
pyarrow==10.0.1
pyasn1==0.5.1
pyasn1-modules==0.3.0
pycocotools==2.0.7
pycparser==2.21
pyct==0.5.0
pydantic==1.10.13
pydata-google-auth==1.8.2
pyDeprecate==0.3.2
pydot==1.4.2
pydot-ng==2.0.0
pydotplus==2.0.2
PyDrive==1.3.1
PyDrive2==1.6.3
pyerfa==2.0.1.1
pygame==2.5.2
Pygments==2.16.1
PyGObject==3.42.1
PyJWT==2.3.0
pymc==5.7.2
PyMeeus==0.5.12
pymystem3==0.2.0
PyOpenGL==3.1.7
pyOpenSSL==23.3.0
pyparsing==3.1.1
pyperclip==1.8.2
pyproj==3.6.1
pyproject_hooks==1.0.0
pyshp==2.3.1
PySocks==1.7.1
pystan==2.19.1.1
pytensor==2.14.2
pytest==7.4.3
python-apt==0.0.0
python-box==7.1.1
python-dateutil==2.8.2
python-louvain==0.16
python-slugify==8.0.1
python-utils==3.8.1
pytorch-lightning==1.6.0
pytz==2023.3.post1
pyviz_comms==3.0.0
PyWavelets==1.5.0
PyYAML==6.0.1
pyzmq==23.2.1
qdldl==0.1.7.post0
qudida==0.0.4
ratelim==0.1.6
referencing==0.32.0
regex==2023.6.3
requests==2.31.0
requests-oauthlib==1.3.1
requirements-parser==0.5.0
rich==13.7.0
rpds-py==0.15.2
rpy2==3.4.2
rsa==4.9
safetensors==0.4.1
scikit-image==0.19.3
scikit-learn==1.2.2
scipy==1.11.4
scooby==0.9.2
scs==3.2.4.post1
seaborn==0.12.2
SecretStorage==3.3.1
Send2Trash==1.8.2
sentry-sdk==1.39.1
setproctitle==1.3.3
shapely==2.0.2
six==1.16.0
sklearn-pandas==2.2.0
smart-open==6.4.0
smmap==5.0.1
sniffio==1.3.0
snowballstemmer==2.2.0
sortedcontainers==2.4.0
soundfile==0.12.1
soupsieve==2.5
soxr==0.3.7
-e git+https://github.com/QData/spacetimeformer.git@bcf953fdac56f6c174041f86ecaecc8c010710e3#egg=spacetimeformer
spacy==3.6.1
spacy-legacy==3.0.12
spacy-loggers==1.0.5
Sphinx==5.0.2
sphinxcontrib-applehelp==1.0.7
sphinxcontrib-devhelp==1.0.5
sphinxcontrib-htmlhelp==2.0.4
sphinxcontrib-jsmath==1.0.1
sphinxcontrib-qthelp==1.0.6
sphinxcontrib-serializinghtml==1.1.9
SQLAlchemy==2.0.23
sqlglot==17.16.2
sqlparse==0.4.4
srsly==2.4.8
stanio==0.3.0
statsmodels==0.14.1
sympy==1.12
tables==3.8.0
tabulate==0.9.0
tbb==2021.11.0
tblib==3.0.0
tenacity==8.2.3
tensorboard==2.15.1
tensorboard-data-server==0.7.2
tensorflow==2.15.0
tensorflow-datasets==4.9.4
tensorflow-estimator==2.15.0
tensorflow-gcs-config==2.15.0
tensorflow-hub==0.15.0
tensorflow-io-gcs-filesystem==0.34.0
tensorflow-metadata==1.14.0
tensorflow-probability==0.22.0
tensorstore==0.1.45
termcolor==2.4.0
terminado==0.18.0
text-unidecode==1.3
textblob==0.17.1
tf-slim==1.1.0
thinc==8.1.12
threadpoolctl==3.2.0
tifffile==2023.12.9
tinycss2==1.2.1
tokenizers==0.15.0
toml==0.10.2
tomli==2.0.1
toolz==0.12.0
torch @ https://download.pytorch.org/whl/cu121/torch-2.1.0%2Bcu121-cp310-cp310-linux_x86_64.whl#sha256=0d4e8c52a1fcf5ed6cfc256d9a370fcf4360958fc79d0b08a51d55e70914df46
torchaudio @ https://download.pytorch.org/whl/cu121/torchaudio-2.1.0%2Bcu121-cp310-cp310-linux_x86_64.whl#sha256=676bda4042734eda99bc59b2d7f761f345d3cde0cad492ad34e3aefde688c6d8
torchdata==0.7.0
torchmetrics==0.5.1
torchsummary==1.5.1
torchtext==0.16.0
torchvision @ https://download.pytorch.org/whl/cu121/torchvision-0.16.0%2Bcu121-cp310-cp310-linux_x86_64.whl#sha256=e76e78d0ad43636c9884b3084ffaea8a8b61f21129fbfa456a5fe734f0affea9
tornado==6.3.2
tqdm==4.66.1
traitlets==5.7.1
traittypes==0.2.1
transformers==4.35.2
triton==2.1.0
tweepy==4.14.0
typer==0.9.0
types-pytz==2023.3.1.1
types-setuptools==69.0.0.0
typing_extensions==4.5.0
tzlocal==5.2
uc-micro-py==1.0.2
ujson==5.9.0
uritemplate==4.1.1
urllib3==2.0.7
vega-datasets==0.9.0
wadllib==1.3.6
wandb==0.16.1
wasabi==1.1.2
wcwidth==0.2.12
webcolors==1.13
webencodings==0.5.1
websocket-client==1.7.0
Werkzeug==3.0.1
widgetsnbextension==3.6.6
wordcloud==1.9.3
wrapt==1.14.1
xarray==2023.7.0
xarray-einstats==0.6.0
xgboost==2.0.2
xlrd==2.0.1
xxhash==3.4.1
xyzservices==2023.10.1
yarl==1.9.4
yellowbrick==1.5
yfinance==0.2.33
zict==3.0.0
zipp==3.17.0