QI2lab / merfish3d-analysis

3D MERFISH data processing
BSD 3-Clause "New" or "Revised" License
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Investigate replacing DEEDS #19

Open dpshepherd opened 2 months ago

dpshepherd commented 2 months ago

Given @AlexCoul feedback and my experience with lack of robustness with DEEDS, look into a different deformable registration algorithm. It also is a pain to compile on certain systems and we are using Alexis' fork which is not ideal.

dpshepherd commented 2 months ago

This looks promising: https://github.com/yongxb/OpticalFlow3d

Just need to validate order for mappings, if we use the forward or inverse based on library conventions, and then test with simpleITK warping.