Investigate replacing dask.array map_overlap() calls with ryomen

QI2lab / merfish3d-analysis

3D MERFISH data processing

BSD 3-Clause "New" or "Revised" License

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Closed dpshepherd closed 4 hours ago

dpshepherd commented 1 month ago

If that works, it would help get rid of some of the horrendous overhead when using dask.array on very large data.

dpshepherd commented 1 month ago

This will definitely work, example of how to use in 3a2a59a

dpshepherd commented 1 month ago

4410707 removes dask usage for chunked GPU deconvolution.

Still need to address for lazy data loading, chunked U-FISH, and any other usage we can find.

Unfortunately, multiview-stitcher still uses dask so we are stuck there.