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QI2lab / merfish3d-analysis

3D MERFISH data processing
BSD 3-Clause "New" or "Revised" License
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refactor: change NDTiff reader #29

Closed dpshepherd closed 1 month ago

dpshepherd commented 1 month ago

Swapped out ndstorage to instead of use tifffile and zarr. Tried to get tensorstore to work, but the store can't be read by it.

NOTE: will need to be careful about the channel indexing, as the zarr attributes produced by tifffile don't have the channel_id mapping. Might need to write some extra information to disk to ensure correct loading.

dpshepherd commented 1 month ago

The motivation here is continued elimination of anything dask related.