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QI2lab / merfish3d-analysis

3D MERFISH data processing
BSD 3-Clause "New" or "Revised" License
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Issue with new environment installation #31

Closed mabbasi6 closed 1 month ago

mabbasi6 commented 1 month ago

Description

Hi,

Just tried installing the latest environment and package and noticed 2 issues:

  1. "pyproject.toml" line 23 needs "git+" for "pycudadecon" installation
  2. After fixing it, installing the package, and running postprocessing, got an error saying "tensorstore" is missing: from merfish3danalysis.postprocess.postprocess import postprocess File "/home/momo/Repos/merfish3d-analysis/src/merfish3danalysis/postprocess/postprocess.py", line 43, in <module> from merfish3danalysis.utils._dataio import return_data_zarr, read_metadatafile, resave_baysor_output File "/home/momo/Repos/merfish3d-analysis/src/merfish3danalysis/utils/_dataio.py", line 22, in <module> import tensorstore as ts ModuleNotFoundError: No module named 'tensorstore'

Thank you.

mabbasi6 commented 1 month ago

@dpshepherd

dpshepherd commented 1 month ago

closed by 00ff209