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QIB-Sheffield
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iBEAt
Image processing pipelines for the iBEAT study
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Merge pull request #1 from QIB-Sheffield/Development
#54
plaresmedima
closed
3 months ago
0
Refactoring DCE fits after changes in dcmri
#53
plaresmedima
closed
6 months ago
0
final changes in run through
#52
plaresmedima
closed
7 months ago
0
Implement ROI fit for DTI and IVIM
#51
JoaoPeriquito
closed
4 months ago
0
Review biomarker names (excel table)
#50
JoaoPeriquito
opened
7 months ago
2
Add phase information (currently none of the analysis uses phase information)
#49
JoaoPeriquito
opened
7 months ago
0
Test dipy IVIM modelling and add it
#48
JoaoPeriquito
closed
4 months ago
0
implement 3D co-registration in MDR for MT (3D sequence)
#47
JoaoPeriquito
opened
7 months ago
1
Add export phase contrast mask (export_segmentation() function)
#46
JoaoPeriquito
closed
4 months ago
0
test renal artery mask for PC
#45
JoaoPeriquito
opened
7 months ago
0
Add numbers to the naming of the studies to appear in order
#44
JoaoPeriquito
closed
6 months ago
0
DCE_aorta() function replace cv2 to skimage
#43
JoaoPeriquito
opened
7 months ago
0
What to do when multiple series are detected?
#42
JoaoPeriquito
opened
7 months ago
0
Check DICOM header for the velocity encoding for Phase contrast
#41
JoaoPeriquito
opened
7 months ago
0
harmonization step: write important acquisition parameters into DICOM headers
#40
JoaoPeriquito
opened
7 months ago
0
Review all standard sequence names (to simpler names)
#39
JoaoPeriquito
closed
6 months ago
2
fetch_kidney_masks()
#38
JoaoPeriquito
closed
6 months ago
0
fetch_dl_models() function
#37
JoaoPeriquito
closed
6 months ago
2
Unified exports to single output folder
#36
plaresmedima
closed
7 months ago
0
Finished streamlining pipelines
#35
plaresmedima
closed
7 months ago
0
update latest functions incl cortex medulla
#34
plaresmedima
closed
7 months ago
0
Pipeline development
#33
plaresmedima
closed
8 months ago
0
Add script for main_local
#32
plaresmedima
closed
1 year ago
0
update iBEAt menu
#31
plaresmedima
closed
1 year ago
0
Code restructure and reorganisation
#30
plaresmedima
closed
1 year ago
0
finalised demo version for workshop
#29
plaresmedima
closed
1 year ago
0
update UNETR
#28
plaresmedima
closed
1 year ago
0
Added UNETR in iBEAT menu
#27
plaresmedima
closed
1 year ago
0
Development
#26
plaresmedima
closed
1 year ago
0
updated requirements
#25
plaresmedima
closed
1 year ago
0
update renal sinus fat calculation
#24
plaresmedima
closed
1 year ago
0
update directory export tool
#23
plaresmedima
closed
1 year ago
0
Sinus fat bug fix
#22
plaresmedima
closed
1 year ago
0
Development
#21
plaresmedima
closed
1 year ago
1
Spring clean of repository
#20
plaresmedima
closed
1 year ago
0
Extended about and iBEAt menu
#19
plaresmedima
closed
1 year ago
0
Changes to cluster script
#18
plaresmedima
closed
5 months ago
0
Added renal sinus fat pipeline
#17
plaresmedima
closed
1 year ago
0
model fits button updated using reg menu
#16
KanishkaS
closed
1 year ago
0
Development
#15
KanishkaS
closed
1 year ago
0
added steven menu and generated executable
#14
plaresmedima
closed
1 year ago
0
adde steven menu
#13
plaresmedima
closed
1 year ago
0
menu updated with co-reg and model fit buttons
#12
KanishkaS
closed
1 year ago
0
co-registration menu for full image co-registration
#11
KanishkaS
closed
1 year ago
0
change in menu definitions
#10
plaresmedima
closed
1 year ago
1
updated dbdicom to the latest version in cluster scripts
#9
JoaoPeriquito
closed
1 year ago
0
splash screen code no longer necessary
#8
plaresmedima
closed
1 year ago
0
fixed setup & install issues
#7
plaresmedima
closed
1 year ago
0
NEW START!!! Merging Development branch with main before new wezel integration
#6
plaresmedima
closed
1 year ago
0
MDR tested and adapted to multi-slice
#5
JoaoPeriquito
closed
2 years ago
0
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