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QIFEIDKN / STAGATE

Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
MIT License
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error raised when denoising #14

Open dhy2002 opened 1 year ago

dhy2002 commented 1 year ago

when i run "adata = STAGATE.train_STAGATE(adata, alpha=0, save_reconstrction=True)" it raises the error: Value passed for key 'STAGATE_ReX' is of incorrect shape. Values of layers must match dimensions (0, 1) of parent. Value had shape (4481, 3000) while it should have had (4481, 36601). so how can i solve this problem? thanks very much.

QIFEIDKN commented 1 year ago

You can run "adata = adata[:, adata.var['highly_variable']]" before running the denosing task. This error raised because the dimension of the denoising matrix should be equal to the dimension of the SCANPY object.