Question about how to get a finer spatial structure

QIFEIDKN / STAGATE

Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics

MIT License

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Question about how to get a finer spatial structure #20

Open Changzhanhe opened 1 year ago

Changzhanhe commented 1 year ago

Hello! I use STAGATE to train my spatial data, while some relatively small spatial structure can not be recognized and clustered. How to set the parameter when using STAGATE.train_STAGATE？ I have already test different alpha with 0,0.5,0.8 ... ..., it still does not work. :(

Thanks a lot!!