Acquiring the standardized version of LIDC.

QIICR / lidc2dicom

Scripts for converting TCIA LIDC-IDRI collection derived data into standard DICOM representation from project-specific XML format.

24 stars 12 forks source link

Acquiring the standardized version of LIDC. #5

Closed MjdMahasneh closed 4 years ago

MjdMahasneh commented 4 years ago

Hello,

I am unsure whether the data available in : https://wiki.cancerimagingarchive.net/display/Public/LIDC-IDRI is the the standardized one or the raw one? it seems that the masks are in .xml format on there rather DICOMs.

Could anyone please kindly elaborate on this.

Many thanks.

fedorov commented 4 years ago

You can find more details about the dataset resulting from the conversion here: https://wiki.cancerimagingarchive.net/display/DOI/Standardized+representation+of+the+TCIA+LIDC-IDRI+annotations+using+DICOM

MjdMahasneh commented 4 years ago

Thank you @fedorov I came across this document, I also found Version 2 http://bit.ly/lidc-dicom-v2 and I was a little confused. Is that the standardized data?

fedorov commented 3 years ago

The final dataset, and the link to the final dataset, are here:

Fedorov, A., Hancock, M., Clunie, D., Brochhausen, M., Bona, J., Kirby, J., Freymann, J., Pieper, S., J W L Aerts, H., Kikinis, R. & Prior, F. DICOM re-encoding of volumetrically annotated Lung Imaging Database Consortium (LIDC) nodules. Med. Phys. (2020). http://dx.doi.org/10.1002/mp.14445