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ERROR - epistatic.correlation #3

Open myoungblom opened 4 years ago

myoungblom commented 4 years ago

I am using the test data with the commands outlined in the manual and am getting an error when using the epistatic.correlation function. Any suggestions?

library(WISH) library(data.table) data.table 1.12.2 using 16 threads (see ?getDTthreads). Latest news: r-datatable.com ped <- fread("./test.ped", data.table=F) tped <- fread("./test.tped", data.table=F) genotype <- generate.genotype(ped, tped) 1103 passed QC phenotype <- as.data.frame(fread("./test_pheno.txt")) epistatic.correlation(phenotype, genotype, threads=16, test=T) Running Test Estimating run time based on ~100.000 models Error in { : task 1 failed - "replacement has 406 rows, data has 203"

RinLinux commented 4 years ago

the phenotype matrix should only have one column Corresponding to the sample and in the same order

myoungblom commented 4 years ago

Great thank you!