Thank you for selflessly sharing your code. I am trying to reproduce SiGra, but I have encountered some problems. Specifically, there are two issues:
I downloaded the processed dataset and weights you provided, and during the testing phase, the ARI shown in each test is around 0.55, but it is not fixed. Is this normal?
When I use the SiGra_visualize.ipynb file in the code to visualize the results, adata displays a UserWarning: Observation names are not unique. To make them unique, call .obs_names_make_unique. Also, the visualization results are incorrect (as shown in the image below). I hope you can provide me some help, thank you.
Thank you for selflessly sharing your code. I am trying to reproduce SiGra, but I have encountered some problems. Specifically, there are two issues:
I downloaded the processed dataset and weights you provided, and during the testing phase, the ARI shown in each test is around 0.55, but it is not fixed. Is this normal?
When I use the SiGra_visualize.ipynb file in the code to visualize the results, adata displays a UserWarning: Observation names are not unique. To make them unique, call .obs_names_make_unique. Also, the visualization results are incorrect (as shown in the image below). I hope you can provide me some help, thank you.
