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QSong-github / scGCN

scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
MIT License
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Transfer labels across omics #10

Closed Kevis9 closed 2 years ago

Kevis9 commented 2 years ago

Hi, QSong! I have some questions about the topic "Transfering labels across omics" mentioned in the paper. I can't find any code related to this topic in this repository, including Batch mixing entropy and Silhouette score these two evaluation metrics.
I want to know how you pre-process the data in multi-omics? In the paper, the data process only mentions common gene features, but ATAC-seq doesn't have gene symbols.

ahassien commented 2 years ago

I would also be interested in this information in case you ended up finding the answer.