I encountered the "bad request" problem
I would be glad to get support in fixing it
Thanks
(tf) C:\Users\ERNESTB>segment_gbm pipeline -T1 C:\Users\ERNESTB\Documents\deepNeuro\ozondo\PRE\T1 -T1POST C:\Users\ERNESTB\Documents\deepNeuro\ozondo\T1 -FLAIR C:\Users\ERNESTB\Documents\deepNeuro\ozondo\PRE\FLAIR -output_folder C:\Users\ERNESTB\Documents\deepNeuro\ozondo\result -save_all_steps -save_only_segmentations
Using TensorFlow backend.
File loading completed.
Traceback (most recent call last):
File "c:\users\ernestb\anaconda3\envs\tf\lib\runpy.py", line 193, in _run_module_as_main
"main", mod_spec)
File "c:\users\ernestb\anaconda3\envs\tf\lib\runpy.py", line 85, in _run_code
exec(code, run_globals)
File "C:\Users\ERNESTB\Anaconda3\envs\tf\Scripts\segment_gbm.exe__main__.py", line 7, in
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\pipelines\Segment_GBM\cli.py", line 86, in main
Segment_GBM_cli()
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\pipelines\shared.py", line 22, in init
self.load()
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\pipelines\Segment_GBM\cli.py", line 16, in load
super(Segment_GBM_cli, self).load()
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\pipelines\shared.py", line 48, in load
getattr(self, args.command)()
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\pipelines\Segment_GBM\cli.py", line 82, in pipeline
quiet=args.quiet)
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\pipelines\Segment_GBM\predict.py", line 70, in predict_GBM
postprocessors=[BinarizeLabel(postprocessor_string='label')])
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\models\model.py", line 284, in load_model_with_output
model = load_old_model(load(model_name), *kwargs)
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\load\load.py", line 70, in load
urlretrieve(data_dict[dataset][1], dataset_path)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 247, in urlretrieve
with contextlib.closing(urlopen(url, data)) as fp:
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 222, in urlopen
return opener.open(url, data, timeout)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 531, in open
response = meth(req, response)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 641, in http_response
'http', request, response, code, msg, hdrs)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 563, in error
result = self._call_chain(args)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 503, in _call_chain
result = func(args)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 755, in http_error_302
return self.parent.open(new, timeout=req.timeout)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 531, in open
response = meth(req, response)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 641, in http_response
'http', request, response, code, msg, hdrs)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 569, in error
return self._call_chain(args)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 503, in _call_chain
result = func(*args)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 649, in http_error_default
raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 400: Bad Request
Hi
I encountered the "bad request" problem I would be glad to get support in fixing it Thanks
(tf) C:\Users\ERNESTB>segment_gbm pipeline -T1 C:\Users\ERNESTB\Documents\deepNeuro\ozondo\PRE\T1 -T1POST C:\Users\ERNESTB\Documents\deepNeuro\ozondo\T1 -FLAIR C:\Users\ERNESTB\Documents\deepNeuro\ozondo\PRE\FLAIR -output_folder C:\Users\ERNESTB\Documents\deepNeuro\ozondo\result -save_all_steps -save_only_segmentations Using TensorFlow backend. File loading completed. Traceback (most recent call last): File "c:\users\ernestb\anaconda3\envs\tf\lib\runpy.py", line 193, in _run_module_as_main "main", mod_spec) File "c:\users\ernestb\anaconda3\envs\tf\lib\runpy.py", line 85, in _run_code exec(code, run_globals) File "C:\Users\ERNESTB\Anaconda3\envs\tf\Scripts\segment_gbm.exe__main__.py", line 7, in
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\pipelines\Segment_GBM\cli.py", line 86, in main
Segment_GBM_cli()
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\pipelines\shared.py", line 22, in init
self.load()
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\pipelines\Segment_GBM\cli.py", line 16, in load
super(Segment_GBM_cli, self).load()
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\pipelines\shared.py", line 48, in load
getattr(self, args.command)()
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\pipelines\Segment_GBM\cli.py", line 82, in pipeline
quiet=args.quiet)
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\pipelines\Segment_GBM\predict.py", line 70, in predict_GBM
postprocessors=[BinarizeLabel(postprocessor_string='label')])
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\models\model.py", line 284, in load_model_with_output
model = load_old_model(load(model_name), *kwargs)
File "c:\users\ernestb\anaconda3\envs\tf\lib\site-packages\deepneuro\load\load.py", line 70, in load
urlretrieve(data_dict[dataset][1], dataset_path)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 247, in urlretrieve
with contextlib.closing(urlopen(url, data)) as fp:
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 222, in urlopen
return opener.open(url, data, timeout)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 531, in open
response = meth(req, response)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 641, in http_response
'http', request, response, code, msg, hdrs)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 563, in error
result = self._call_chain(args)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 503, in _call_chain
result = func(args)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 755, in http_error_302
return self.parent.open(new, timeout=req.timeout)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 531, in open
response = meth(req, response)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 641, in http_response
'http', request, response, code, msg, hdrs)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 569, in error
return self._call_chain(args)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 503, in _call_chain
result = func(*args)
File "c:\users\ernestb\anaconda3\envs\tf\lib\urllib\request.py", line 649, in http_error_default
raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 400: Bad Request