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QihuangZhang / CeLEry

CeLEry: cell location recovery in single-cell RNA sequencing
MIT License
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from data.Mouse2D.MP1_SVG import d_g #1

Closed zy-fang closed 1 year ago

zy-fang commented 1 year ago

Hi, Qihuang

Thank you for your outstanding work on CeLEry.

I've been going through the code and paper and noticed something interesting - the import statement "from data.Mouse2D.MP1_SVG import d_g." However, I couldn't find the "data.Mouse2D.MP1_SVG" code file. Would it be possible for you to provide us with access to this file or any relevant information that could help us locate it?

Best regards, Zhaoyu

QihuangZhang commented 1 year ago

Hi Zhaoyu,

This step imports a prespecified list of SVG selected by other methods and stored in the file MP1_SVG.py. You may now find it in tutorial/Mouse2D/MP1_SVG.py

Of note that this is not the essential step and can be replaced by other ways of selecting spatial variable genes.

Qihuang