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QuKunLab / SpatialBenchmarking

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Error - running test run. #15

Closed vinsilico closed 1 year ago

vinsilico commented 1 year ago

I am getting this error while I was testing my installation with dataset15. It fails in the novoSpaRc methods.Any advice will be much appreciated. Thanks

Traceback (most recent call last): File "Tutorial.py", line 89, in Result = test.Imputing(Methods) File "/xxxxx/xxxxx/SpatialBenchmarking/Benchmarking/SpatialGenes.py", line 296, in Imputing result_Novosparc = self.novoSpaRc_impute() File "/xxxxx/xxxx/SpatialBenchmarking/Benchmarking/SpatialGenes.py", line 190, in novoSpaRc_impute np.save(novo.npy, gw) NameError: name 'novo' is not defined

vinsilico commented 1 year ago

fixed the issue by single quoting the novo.npy.