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QuKunLab / SpatialBenchmarking

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Normalization is only for scRNA data #9

Closed sinanugur closed 2 years ago

sinanugur commented 2 years ago

Hello,

It seems the normalization was only performed on scRNA data. Is there a special reason for that? For example, in Stereoscope pipeline:

https://github.com/QuKunLab/SpatialBenchmarking/blob/3586b9d81c479f939aa40adedfe1c95c5b496bcb/Codes/Deconvolution/Stereoscope_pipeline.py

Thanks.

wenruyustc commented 2 years ago

Hello, There is no special reason, we just followed the tutorial of each methods.

sinanugur commented 2 years ago

Thanks for your answer @wenruyustc