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R-ArcGIS / r-bridge-install

Install the R ArcGIS Tools
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Error while running binding install script #3

Closed dlradke closed 9 years ago

dlradke commented 9 years ago

I am trying to run the "Install R Bindings" from the "R Integration.pyt" and get the error below. I have ArcGIS 10.3.1 and R 3.2.1. I have tried the suggested troubleshooting techniques on the main github page but have had no success. It looks like it is having trouble reading the .py scripts but I could be mistaken. Is anyone else having this problem or does anyone have any suggestions on where to go from here? I've copy and pasted the details from the geoprocessing window in Arc.

Executing: InstallBindings true Start Time: Mon Aug 10 16:34:41 2015 Running script InstallBindings... https://github.com/R-ArcGIS/r-bridge/releases/download/v1.0.0.111/arcgisbinding_1.0.0.111.zip Saving URL to 'c:\users\susanr~1\appdata\local\temp\arcc146\tmpxqfp7t\arcgisbinding_1.0.0.111.zip'

Traceback (most recent call last): File "", line 177, in execute File "C:\Dan\arcgisbindingR\r-bridge-install-master\rtools\install_package.py", line 77, in install_package execute_r('Rcmd', 'INSTALL', package_path) File "C:\Dan\arcgisbindingR\r-bridge-install-master\rtools\bootstrap_r.py", line 15, in execute_r if r_install_valid(): File "C:\Dan\arcgisbindingR\r-bridge-install-master\rtools\bootstrap_r.py", line 71, in r_install_valid valid = path_exists(r_install_path) File "C:\Dan\arcgisbindingR\r-bridge-install-master\rtools\bootstrap_r.py", line 65, in path_exists if os.path.exists(path): File "C:\Python27\ArcGIS10.3\Lib\genericpath.py", line 18, in exists os.stat(path) TypeError: coercing to Unicode: need string or buffer, NoneType found

Failed to execute (InstallBindings). Failed at Mon Aug 10 16:34:53 2015 (Elapsed Time: 11.42 seconds)

Cheers, Dan

scw commented 9 years ago

Hello @dlradke,

It looks like the script is having trouble picking up where your R installation is. Did you install R using the standard installer? Could you post the results of running the "R Installation Details" script in the toolbox?

Thanks, Shaun

dlradke commented 9 years ago

Executing: RInstallDetails Start Time: Mon Aug 10 18:34:34 2015 Running script RInstallDetails... R not installed. Please install R prior to using this toolbox. The R installation can be found at: http://www.r-project.org/

Completed script RInstallDetails... Failed to execute (RInstallDetails). Failed at Mon Aug 10 18:34:34 2015 (Elapsed Time: 0.01 seconds)

Looks like that may be the issue. I used the standard installer for R and its path is "C:\Program Files\R\R-3.2.1"

Dan

scw commented 9 years ago

OK, it looks like the detection logic for finding your R installation from the registry is failing. Could you do the following to help me debug your issue?

  1. Open the Run box (Win+R) and type regedit
  2. From the Edit > Find dialog, search the keys for the string R-Core, as seen here: screen shot 2015-08-11 at 12 58 38 am
  3. On my machine (64-bit), searching for that string shows two locations:
    HKEY_LOCAL_MACHINE\SOFTWARE\R-core
    HKEY_LOCAL_MACHINE\SOFTWARE\Wow6432Node\R-core
  1. Once it finds a location, right click on the key named 'R-Core', and select export. That will create a '.reg' file, that's really just text. Attach the text contents of that file here (if possible).

Thanks!

dlradke commented 9 years ago

Here is the result.

Key Name: HKEY_LOCAL_MACHINE\SOFTWARE\Wow6432Node\R-core Class Name: Last Write Time: 8/10/2015 - 6:51 PM

Key Name: HKEY_LOCAL_MACHINE\SOFTWARE\Wow6432Node\R-core\R Class Name: Last Write Time: 8/10/2015 - 6:51 PM Value 0 Name: InstallPath Type: REG_SZ Data: C:\Program Files\R\R-3.2.1

Value 1 Name: Current Version Type: REG_SZ Data: 3.2.1

Key Name: HKEY_LOCAL_MACHINE\SOFTWARE\Wow6432Node\R-core\R\3.2.1 Class Name: Last Write Time: 8/10/2015 - 6:51 PM Value 0 Name: InstallPath Type: REG_SZ Data: C:\Program Files\R\R-3.2.1

Key Name: HKEY_LOCAL_MACHINE\SOFTWARE\Wow6432Node\R-core\R32 Class Name: Last Write Time: 8/10/2015 - 6:51 PM Value 0 Name: InstallPath Type: REG_SZ Data: C:\Program Files\R\R-3.2.1

Value 1 Name: Current Version Type: REG_SZ Data: 3.2.1

Key Name: HKEY_LOCAL_MACHINE\SOFTWARE\Wow6432Node\R-core\R32\3.2.1 Class Name: Last Write Time: 8/10/2015 - 6:51 PM Value 0 Name: InstallPath Type: REG_SZ Data: C:\Program Files\R\R-3.2.1

thanks

dlradke commented 9 years ago

Hey Shaun,

similar to your computer, R-Core was in 2 locations. Here is the print out to the other one.

Key Name: HKEY_LOCAL_MACHINE\SOFTWARE\R-core Class Name: Last Write Time: 8/25/2015 - 12:08 PM

Key Name: HKEY_LOCAL_MACHINE\SOFTWARE\R-core\R Class Name: Last Write Time: 8/25/2015 - 12:08 PM Value 0 Name: InstallPath Type: REG_SZ Data: C:\Program Files\R\R-3.2.1

Value 1 Name: Current Version Type: REG_SZ Data: 3.2.1

Key Name: HKEY_LOCAL_MACHINE\SOFTWARE\R-core\R\3.2.1 Class Name: Last Write Time: 8/25/2015 - 12:08 PM Value 0 Name: InstallPath Type: REG_SZ Data: C:\Program Files\R\R-3.2.1

Key Name: HKEY_LOCAL_MACHINE\SOFTWARE\R-core\R64 Class Name: Last Write Time: 8/25/2015 - 12:08 PM Value 0 Name: InstallPath Type: REG_SZ Data: C:\Program Files\R\R-3.2.1

Value 1 Name: Current Version Type: REG_SZ Data: 3.2.1

Key Name: HKEY_LOCAL_MACHINE\SOFTWARE\R-core\R64\3.2.1 Class Name: Last Write Time: 8/25/2015 - 12:08 PM Value 0 Name: InstallPath Type: REG_SZ Data: C:\Program Files\R\R-3.2.1

Still having no luck with the install.

Dan

scw commented 9 years ago

Hello Dan,

We've updated both the bridge library, and the installer. Could you update from GitHub (or download the Zip archive again) and see if the newer release fixes your issue? I'm now checking both the 32- and 64-bit registry hives, which hopefully will fix your problem. It did on the one machine I had that had a similar configuration to the one you initially posted. If it doesn't work, also let me know and we can keep digging.

Cheers, Shaun

dlradke commented 9 years ago

Hey Shaun,

The install actually worked about 2 or 3 weeks ago. Not sure why but it didn't work in the morning, and then did later that afternoon. It seems to be working well and I've been able to start developing tools using R scripts. I will run the update script just to make sure I'm up to date. Thanks for fixing the issue.

Dan

dlradke commented 9 years ago

I downloaded the new release and it now gives me an error when I try and run a geoprocessing tool.

Error in .Call("arc_warning", conditionMessage(w), PACKAGE = "rarcproxy") : "arc_warning" not available for .Call() for package "rarcproxy"

I have tried to run the install bindings script and checked the override box and get this error.

Executing: InstallBindings true Start Time: Tue Sep 08 14:59:27 2015 Running script InstallBindings... https://github.com/R-ArcGIS/r-bridge/releases/download/v1.0.0.113/arcgisbinding_1.0.0.113.zip Saving URL to 'c:\users\johnra~1\appdata\local\temp\arcc016\tmpamvapm\arcgisbinding_1.0.0.113.zip' package 'arcgisbinding' successfully unpacked and MD5 sums checked

Don't know what is going on but not thrilled that it is no longer working.

Cheers, Dan

dlradke commented 9 years ago

I fixed the install issue but I still get the "Error in .Call(..." when trying to run any geoprocessing tools, including the ones included in the zip file.

Dan

scw commented 9 years ago

@dlradke D'oh! Sorry for introducing this issue for you. Fortunately, the fix should be easy enough. On your machine, R is installing packages into the "Program Files" directory, which requires escalated privileges to write to. We're aware of the issue and are planning a better fix, but for now, could you:

  1. Close ArcMap
  2. Right click on the icon you use to open it and select "Run as Administrator" and then try the upgrade script a second time.

Sorry again for the inconvenience. Note -- I wrote this prior to your second message, so see if it does fix it. If not, you can try reinstalling from scratch using the 'Install Bindings' option and select 'Overwrite existing'.

dlradke commented 9 years ago

Okay seems to be working now. Had a bit of a scare there.

Thanks for the help. Dan

scw commented 9 years ago

Great, glad the bridge is working fine now. I think we've resolved the original registry issue with the latest release, so I'm going to mark this issue as closed, but you're welcome to create a new issue if you hit any further problems. Feel free to contact our R team if you need any assistance, we're at R_bridge@esri.com.

josesevilla commented 8 years ago

Hi there, I am now having the same error message for error in calling rarcproxy, I was following the instructioins in the course "_Part 1 of a two-part webinar series on integrating the statistical programming language R with Esri's ArcGIS for Desktop.

Cameron Plouffe of the Esri Canada Education and Research group covers several basic R programming concepts and manipulating data frames using Hadley Wickham's "dplyr" package, and then demonstrates how you can use the new R-ArcGIS bridge to interface directly to ArcGIS geodatabases within R.

Slide deck:http://slides.com/camplouffe/integrating-r-with-arcgis Webinar materials: https://github.com/cplouffe/r-arcgis-webinar

Integrating R with ArcGIS (Part 2): https://www.youtube.com/watch?v=TNnCgQ-jG2I

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When going through the Part 1 video of the course, everything seemed to go ok. It is when I tried to add the R script as a tool in arctoolbox (Part 2 of the course after performing the ANOVA analysis) that I had the message: _Executing: Script toronto_crime Drug_Arrests Population 4 C:\Users\josesevilla\Documents\ArcGIS\Default.gdb\toronto_crime_Script2 C:\Users\josesevilla\Documents\ArcGIS\Default.gdb\toronto_crime_Script3 Start Time: Mon Jul 18 10:34:08 2016 Running script Script... Error in .Call("arc_error", msg, PACKAGE = "rarcproxy") : "arcerror" not available for .Call() for package "rarcproxy" Completed script Script... Succeeded at Mon Jul 18 10:34:09 2016 (Elapsed Time: 1,07 seconds)

I tried running ArcMAP as Administrator but to no avail...