Now if anyone is foolish enough to include the faceting column in the intgroups_to_plot list in the config parameters, the analysis will be stopped and a helpful message will print so that troubleshooting takes less than 3 days.
There are checks in the snakemake code (module 1) and in the R code for anyone who runs with Rscript, independent of Snakemake.
Snakemake also checks whether the reference files specified in the config exist before starting the analysis.
Tests aren't running atm. I think we wore out all the github runners.
Now if anyone is foolish enough to include the faceting column in the intgroups_to_plot list in the config parameters, the analysis will be stopped and a helpful message will print so that troubleshooting takes less than 3 days.
There are checks in the snakemake code (module 1) and in the R code for anyone who runs with Rscript, independent of Snakemake.
Snakemake also checks whether the reference files specified in the config exist before starting the analysis.
Tests aren't running atm. I think we wore out all the github runners.