Some things to note...
1) params may be altered a bit. Will note here and update when I have to change something so we can go back and cross reference schemas and configs and Rmd files.
using a single function for get_params simplifies things, but also might mean that a few parameters belong more in the 'common' section, which means that change will need to be propagated.
solvent_control is an example
Otherwise: I'm planning to use function arguments (e.g., context = "analysis" vs "QC") to have control structures that specify how a function should run in the context of the QC script vs DESeq/report generation
Some things to note... 1) params may be altered a bit. Will note here and update when I have to change something so we can go back and cross reference schemas and configs and Rmd files.
solvent_controlis an example