search

R-ODAF / R-ODAF_Health_Canada

Health Canada's version of the R-ODAF pipeline, which includes additional visualization and pipelining features
MIT License
2 stars 3 forks source link

Config params for metadata and contrast file names #233

Closed LMBradford closed 1 month ago

LMBradford commented 2 months ago

At the moment, the file names metadata.txt and contrasts.txt are hard-coded in. This is usually fine, but sometimes annoying when running multiple rounds of analysis (for troubleshooting, or for complex projects) where we want to edit the input files. Currently that requires renaming the "file of the moment" to metadata.txt or contrasts.txt but that makes record keeping a bit hard and it's easy to mess up and overwrite something.

Could we instead have parameters "metadata_file" and "contrast_file" in the config? We'd have to change the many hard-coded lines but that seems manageable.

LMBradford commented 1 month ago

Closed with merge https://github.com/R-ODAF/R-ODAF_Health_Canada/pull/244