Now metadata.QC_applied.txt goes in the output/QC folder instead of inputs/metadata. This cleans up the organization, as all files in inputs/ are those provided by the user before running the pipeline. It also prevents the file from being overwritten when multiple rounds of QC are done with different parameters, and makes it easier to associate a particular metadata.QC_applied.txt file with the round of QC that produced it.
Note that the truth checksum file in the test data repo was changed to reflect this, so branches without this merge will no longer pass tests.
Now metadata.QC_applied.txt goes in the output/QC folder instead of inputs/metadata. This cleans up the organization, as all files in inputs/ are those provided by the user before running the pipeline. It also prevents the file from being overwritten when multiple rounds of QC are done with different parameters, and makes it easier to associate a particular metadata.QC_applied.txt file with the round of QC that produced it.
Note that the truth checksum file in the test data repo was changed to reflect this, so branches without this merge will no longer pass tests.