AFS_survey_template_update

[aspina7]

Updating the survey templates to be based of Kobo datasets - starting with mortality and vaccination. (Currently we dont have nutrition dictionary yet)

This PR is dependent on this epidict PR in order to function

[pbkeating]

All about lower case these days 😊

From: Alex Spina notifications@github.com Sent: 01 November 2020 07:38 To: R4EPI/sitrep sitrep@noreply.github.com Cc: Patrick Keating Patrick.Keating@london.msf.org; Mention mention@noreply.github.com Subject: Re: [R4EPI/sitrep] AFS_survey_template_update (#275)

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@aspina7 commented on this pull request.

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In inst/rmarkdown/templates/nutrition/skeleton/skeleton.Rmdhttps://github.com/R4EPI/sitrep/pull/275#discussion_r515587791:

@@ -956,7 +1020,7 @@ current date.

 ```{r save_cleaned_data}

-# rio::export(study_data_cleaned, str_glue("study_data_cleaned_{Sys.Date()}.xlsx"))

+# rio::export(study_data_cleaned, here::here("Data", str_glue("study_data_cleaned_{Sys.Date()}.xlsx")))

@pbkeating<https://github.com/pbkeating> to confirm folder naming structure - capitalised?

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[aspina7]

This PR is dependent on this epidict PR in order to function

pr no longer dependent on a branch - should build from main to finalize template

[aspina7]

Let's jump on a call and I'll talk you through it

On Thu, 20 Jan 2022, 15:27 pbkeating, @.***> wrote:

@.**** commented on this pull request.

In inst/rmarkdown/templates/mortality/skeleton/skeleton.Rmd https://github.com/R4EPI/sitrep/pull/275#discussion_r788876281:

@@ -924,24 +1088,26 @@ for lack of consent. The reasons for no consent are shown below.

This chunk will create a table of dropped individuals by reason for no consent.

-Note that these reasons are spread over multiple columns, thus the proportion -needs to be of the total and missings need to be dropped.

 ```{r consent_reasons}

I can't see what has been done here, but looks like you already have a
solution?

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[aspina7]

merging for now