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R4EPI / sitrep

Report templates and helper functions for applied epidemiology
https://r4epi.github.io/sitrep/
GNU General Public License v3.0
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Nb outbreak templates update #293

Closed nsbatra closed 1 year ago

nsbatra commented 2 years ago

Don't merge yet - just doing PR to make @aspina7 aware and changes visible for the AJS revisions. I have done the following: -General troubleshoot and code alignment with Applied Epi style -Switched to pacman::p_load() -Switched aweek for tsibble -Switched guess_dates() to parse_date() -Switched incidence to ggplot2, adding scale_fill_viridis() where necessary -Now using janitor -Added tidylog (note: it now appears in Rmd output - looks ugly) -Added slider plot with 14-day moving average (geom_line) -Began updating tables to gtsummary but am still stuck on this issue

aspina7 commented 1 year ago

closing as updated directly in #275