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RADar-AZDelta / Rabbit-in-a-Blender

An ETL pipeline to transform your EMP data to OMOP.
https://radar-azdelta.github.io/Rabbit-in-a-Blender/
GNU General Public License v3.0
11 stars 3 forks source link

Allow processing SEMI-APPROVED concepts during ETL testing #22

Closed lbertelo01 closed 8 months ago

lbertelo01 commented 11 months ago

If you want to test your ETL in your dev branch, it would be helpful that semi-approved concepts get processed as well. Then you will have confirmation that your ETL runs errorless and is ready to be reviewed by a colleague.

pjlammertyn commented 8 months ago

Solved in version 0.0.36

you will need to add the --process-semi-approved-mappings CLI argument

# uninstall the package
pip uninstall -y Rabbit-in-a-Blender
# wait a moment
sleep 10
# install
pip install --no-cache-dir Rabbit-in-a-Blender
kdenturc commented 8 months ago

@pjlammertyn while trying a lot of riab cycles to attempt a labo filled measurement table, command: riab --run-etl . --table measurement --process-semi-approved-mappings ETL ran, I have the semi-approved mappings in my work tables, but not in my measurement omop table image image Zit wel in source_to_concept_map image

howcome?

pjlammertyn commented 8 months ago

solved in RiaB version 0.0.37