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RADar-AZDelta / Rabbit-in-a-Blender

An ETL pipeline to transform your EMP data to OMOP.
https://radar-azdelta.github.io/Rabbit-in-a-Blender/
GNU General Public License v3.0
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RIAB: check for invalid fk concept domains in UNCHECKED usagi.csv bug #32

Closed kdenturc closed 8 months ago

kdenturc commented 8 months ago

@pjlammertyn If running Riab lab measurement, Riab gives an error on fk domains of UNCHECKED concepts image

if automapping is on in KEUN, it gives concepts a certain domain, which is not measurement.. solution; this check should not apply on UNCHECKED concepts

tx for following @BostoenToby @sieldep

pjlammertyn commented 8 months ago

added filter to only check for APPROVED concepts (or SEMI-APPROVED, if that argument is passed in the CLI)

see commit https://github.com/RADar-AZDelta/Rabbit-in-a-Blender/commit/b495df2473c06cc5580ee06d149c75644bc79350