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RADar-AZDelta / Rabbit-in-a-Blender

An ETL pipeline to transform your EMP data to OMOP.
https://radar-azdelta.github.io/Rabbit-in-a-Blender/
GNU General Public License v3.0
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SQL Server: riab --run-etl doesn't push the vocabulary table data directly in the omop zone, but puts it in the work zone until the second stage of the ETL process #66

Closed pjlammertyn closed 3 months ago

pjlammertyn commented 3 months ago

Because of this, the custom concepts aren't mapped:

https://github.com/RADar-AZDelta/Rabbit-in-a-Blender/blob/main/src/riab/etl/sql_server/templates/etl/%7Bomop_table%7D_merge.sql.jinja#L157-L158

pjlammertyn commented 3 months ago

solved in pull request https://github.com/RADar-AZDelta/Rabbit-in-a-Blender/pull/68