FileNotFoundError: [Errno 2] No such file or directory: '/usr/share/ChimeraX-icon.svg'

[rupesh-sinha]

Hi,

I was trying to install chimerax-rc.deb on my ubuntu 22.04 system using following command but returned error:

(base) rupesh@rupesh-sinha:~/rupesh/colabfold$ sudo apt-get install /home/rupesh/Downloads/chimerax-rc.deb Reading package lists... Done Building dependency tree... Done Reading state information... Done Note, selecting 'ucsf-chimerax' instead of '/home/rupesh/Downloads/chimerax-rc.deb' ucsf-chimerax is already the newest version (1.5+rc2022.10.18ubuntu22.04). 0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded. 1 not fully installed or removed. After this operation, 0 B of additional disk space will be used. Do you want to continue? [Y/n] y Setting up ucsf-chimerax (1.5+rc2022.10.18ubuntu22.04) ... Install desktop menu and associated mime types Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/main.py", line 726, in init run(sess, cmd) File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/commands/run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/commands/cli.py", line 2897, in run result = ci.function(session, **kw_args) File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/linux/cmd.py", line 23, in linux_xdg_install install(session, verbose=verbose, system=system) File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/linux/_xdg.py", line 430, in install install_icons(session, info, verbose) File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/linux/_xdg.py", line 288, in install_icons shutil.copyfile(path, os.path.join(p2, '%s.svg' % info.name)) File "/usr/lib/ucsf-chimerax/lib/python3.9/shutil.py", line 264, in copyfile with open(src, 'rb') as fsrc: FileNotFoundError: [Errno 2] No such file or directory: '/usr/share/ChimeraX-icon.svg' dpkg: error processing package ucsf-chimerax (--configure): installed ucsf-chimerax package post-installation script subprocess returned error exit status 70 Errors were encountered while processing: ucsf-chimerax E: Sub-process /usr/bin/dpkg returned an error code (1)

Please help!

Note: ChimeraX 1.4 was running fine in my system I thought to upgrade to 1.5 to use 'alphafold contacts' command.

[tomgoddard]

This issue is now reported in the main ChimeraX issue tracking system here

https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/7830

[rupesh-sinha]

Hi I tried again with the Oct 19th 2022 release but getting the similar error:

$ sudo apt-get install ~/Downloads/chimerax-rc.deb [sudo] password for rupesh: Reading package lists... Done Building dependency tree... Done Reading state information... Done Note, selecting 'ucsf-chimerax' instead of '/home/rupesh/Downloads/chimerax-rc.deb' The following packages will be upgraded: ucsf-chimerax 1 upgraded, 0 newly installed, 0 to remove and 45 not upgraded. 1 not fully installed or removed. Need to get 0 B/338 MB of archives. After this operation, 0 B of additional disk space will be used. Get:1 /home/rupesh/Downloads/chimerax-rc.deb ucsf-chimerax amd64 1.5+rc2022.10.20ubuntu22.04 [338 MB] (Reading database ... 241272 files and directories currently installed.) Preparing to unpack .../Downloads/chimerax-rc.deb ... Deregister desktop menu and associated mime types Remove Python cache files Unpacking ucsf-chimerax (1.5+rc2022.10.20ubuntu22.04) over (1.5+rc2022.10.18ubuntu22.04) ... Setting up ucsf-chimerax (1.5+rc2022.10.20ubuntu22.04) ... Install desktop menu and associated mime types Traceback (most recent call last): File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/main.py", line 726, in init run(sess, cmd) File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/commands/run.py", line 38, in run results = command.run(text, log=log, return_json=return_json) File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/commands/cli.py", line 2897, in run result = ci.function(session, **kw_args) File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/linux/cmd.py", line 23, in linux_xdg_install install(session, verbose=verbose, system=system) File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/linux/_xdg.py", line 430, in install install_icons(session, info, verbose) File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/linux/_xdg.py", line 288, in install_icons shutil.copyfile(path, os.path.join(p2, '%s.svg' % info.name)) File "/usr/lib/ucsf-chimerax/lib/python3.9/shutil.py", line 264, in copyfile with open(src, 'rb') as fsrc: FileNotFoundError: [Errno 2] No such file or directory: '/usr/share/ChimeraX-icon.svg' dpkg: error processing package ucsf-chimerax (--configure): installed ucsf-chimerax package post-installation script subprocess returned error exit status 70 Processing triggers for man-db (2.10.2-1) ... Errors were encountered while processing: ucsf-chimerax N: Download is performed unsandboxed as root as file '/home/rupesh/Downloads/chimerax-rc.deb' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) E: Sub-process /usr/bin/dpkg returned an error code (1)

Thanks in advance for your help!

[gregcouch]

This is fixed. And is in the daily builds since October 21st.