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RBVI / stringApp

Cytoscape interface to STRING and STITCH
BSD 2-Clause "Simplified" License
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Results Panel not viewable for some network clustering settings #43

Open rbutleriii opened 12 months ago

rbutleriii commented 12 months ago

I've encountered what looks like a bug for the PC version of the StringApp, it will only allow the Results Panel to be shown for MCL clustered networks for some of the clustering thresholds. Otherwise it will diasppear and the View>Show Results Panel will be greyed out.

MCL inflation value = 2 image

MCL inflation value = 3 image

Version: 3.9.1 
Java: 11.0.6 by AdoptOpenJDK 
Java Home: c:\program files\common files\i4j_jres\11.0.6 
OS: Windows 10 10.0 - amd64

stringApp, version=2.0.1
yFiles Layout Algorithms, version=1.1.3
cyBrowser, version=1.3.11
CX Support, version=2.8.1
cyChart, version=0.3.1
enhancedGraphics, version=1.5.5
FileTransfer, version=1.3
Legend Creator, version=1.1.6
NetworkAnalyzer, version=4.4.8
clusterMaker2, version=2.3.4
scaramonche commented 11 months ago

Hey! Thanks for reporting this issue! My suspicion is that stringApp does not recognize some of the newly created clustered networks as STRING networks. Since they are actually STRING networks based on what you have done, you can tell stringApp that by using the menu "Apps -> STRING -> Set as STRING network". Unfortunately, I can't reproduce the same behaviour right now, but I will keep an eye on it. Please let me know if the above works for you and in case you notice any reproducible cases when this happens. Best wishes, Nadya