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RCollins13 / CNView

Visualization and annotation of CNVs from population-scale whole-genome sequencing data
MIT License
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Sample Name issue #3

Closed raymond301 closed 8 years ago

raymond301 commented 8 years ago

I discovered that if the sample name has a hyphen in it, the program errors out. Like this:

+-------------------+ | CNView Visualizer | | (c) 2016 | +-------------------+ Reading sample IDs from samplenames.txt Filtering & loading coverage matrix... Complete Compressing coverage matrix [600 bp bins]... Complete Performing intra-sample normalization... Complete Performing inter-sample normalization... Complete Plotting samples to myExample.pdf...Error in x[j] : invalid subscript type 'list' Calls: CNView -> pt -> [ -> [.data.frame Execution halted

When I take the hyphens out of the sample names, everything works fine.

Cheers!

RCollins13 commented 8 years ago

Thanks for reminding me about this issue; I recall you had mentioned it previously.

Fortunately it was an easy fix. If you pull the new commit from master you should be able to include samples with hyphens in their names.

I've included a few new features in this commit, although I'm still working on a better backend interface for hg38/hg18 and non-human reference genomes through UCSC, too. That might take a bit longer.

-Ryan