ghost
commented
2 years ago Fixed in revamp to Python 3 / RDFLib 6
Closed bernhardwinkel closed 2 years ago
ghost
commented
2 years ago Fixed in revamp to Python 3 / RDFLib 6
Running "rdflib.Graph('LevelDB')" gave the error: ..... File "/home/****/anaconda3/lib/python3.5/site-packages/rdflib_leveldb/leveldbstore.py", line 31, in
import rdflib_leveldb.picklr as picklr
File "rdflib_leveldb/picklr.pyx", line 2, in init rdflib_leveldb.picklr (rdflib_leveldb/picklr.c:2037)
ImportError: cannot import name GraphValue
So I went to picklr.pyx and removed all references to GraphValue, since the class is obsolete. I then reran the command, and got this long traceback:
Traceback (most recent call last): File "/home/_/anaconda3/lib/python3.5/site-packages/rdflib_leveldb/lru.py", line 29, in wrapper result = cache.pop(key) KeyError: (<rdflib_leveldb.leveldbstore.LevelDBStore object at 0x7f6032c40ef0>, rdflib.term.URIRef('file:///home/_/storage/reference-data/misc/?xml version="1.0"?'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last): File "/home/_/anaconda3/lib/python3.5/site-packages/rdflib_leveldb/lru.py", line 67, in wrapper result = cache[key] KeyError: (<rdflib_leveldb.leveldbstore.LevelDBStore object at 0x7f6032c40ef0>, rdflib.term.URIRef('file:///home/_/storage/reference-data/misc/?xml version="1.0"?'))
During handling of the above exception, another exception occurred:
Traceback (most recent call last): File "rdf.py", line 11, in
efo.parse(ontodir + 'efo.rdf', format='n3')
File "/home/_/anaconda3/lib/python3.5/site-packages/rdflib/graph.py", line 1041, in parse
parser.parse(source, self, _args)
File "/home/**/anaconda3/lib/python3.5/site-packages/rdflib/plugins/parsers/notation3.py", line 1899, in parse
TurtleParser.parse(self, source, conj_graph, encoding, turtle=False)
File "/home//anaconda3/lib/python3.5/site-packages/rdflib/plugins/parsers/notation3.py", line 1870, in parse
p.loadStream(source.getByteStream())
File "/home//anaconda3/lib/python3.5/site-packages/rdflib/plugins/parsers/notation3.py", line 434, in loadStream
return self.loadBuf(stream.read()) # Not ideal
File "/home//anaconda3/lib/python3.5/site-packages/rdflib/plugins/parsers/notation3.py", line 440, in loadBuf
self.feed(buf)
File "/home//anaconda3/lib/python3.5/site-packages/rdflib/plugins/parsers/notation3.py", line 466, in feed
i = self.directiveOrStatement(s, j)
File "/home//anaconda3/lib/python3.5/site-packages/rdflib/plugins/parsers/notation3.py", line 487, in directiveOrStatement
j = self.statement(argstr, i)
File "/home//anaconda3/lib/python3.5/site-packages/rdflib/plugins/parsers/notation3.py", line 725, in statement
j = self.property_list(argstr, i, r[0])
File "/home//anaconda3/lib/python3.5/site-packages/rdflib/plugins/parsers/notation3.py", line 1093, in property_list
self.makeStatement((self._context, sym, subj, obj))
File "/home//anaconda3/lib/python3.5/site-packages/rdflib/plugins/parsers/notation3.py", line 716, in makeStatement
self._store.makeStatement(quadruple, why=self._reason2)
File "/home//anaconda3/lib/python3.5/site-packages/rdflib/plugins/parsers/notation3.py", line 1764, in makeStatement
self.graph.add((s, p, o))
File "/home//anaconda3/lib/python3.5/site-packages/rdflib/graph.py", line 1324, in add
self.store.add((s, p, o), context=c, quoted=False)
File "/home//anaconda3/lib/python3.5/site-packages/rdflib_leveldb/leveldbstore.py", line 203, in add
s = _to_string(subject)
File "/home//anaconda3/lib/python3.5/site-packages/rdflib_leveldb/lru.py", line 32, in wrapper
result = user_function(_args, *_kwds)
File "/home/*/anaconda3/lib/python3.5/site-packages/rdflib_leveldb/lru.py", line 70, in wrapper
result = user_function(_args, _kwds)
File "/home/**/anaconda3/lib/python3.5/site-packages/rdflib_leveldb/leveldbstore.py", line 399, in _to_string
self.__k2i.Put(k, i)
TypeError: a bytes-like object is required, not 'str'