search

RECETOX / galaxytools

Set of Galaxy tool wrappers developed at RECETOX
MIT License
13 stars 13 forks source link

RAMClustR: update to 1.3.0 #335

Closed hechth closed 1 year ago

hechth commented 1 year ago

As soon as the RAMClustR changes are merged (https://github.com/cbroeckl/RAMClustR/pull/39) we can update the Galaxy tools to work with the newer version. This means we can implement another way to read data, which is passing a "data.frame" object. We can either accept anything that can be read into a dataframe under this (any tabular format or R objects) and see if it fulfills the requirements or we can explicitly accept only tabular files, i.e. parquet which is outputted from recetox-aplcms.

hechth commented 1 year ago

After discussion, we agreed that the new input option will simply be called recetox-aplcms and will take the metadata and intensity table from recetox-aplcms and do all data transformation that is necessary to read the tool output.