When running the networking on newer matchms output you get the following error:
Traceback (most recent call last):
File "/opt/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/recetox/matchms_networking/d8e937f335b8/matchms_networking/matchms_networking_wrapper.py", line 38, in <module>
main(argv=sys.argv[1:])
File "/opt/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/recetox/matchms_networking/d8e937f335b8/matchms_networking/matchms_networking_wrapper.py", line 31, in main
network.create_network(scores, args.score_name)
File "/usr/local/tools/_conda/envs/__matchms@0.23.1/lib/python3.11/site-packages/matchms/networking/SimilarityNetwork.py", line 119, in create_network
similars_idx, similars_scores = get_top_hits(scores, identifier_key=self.identifier_key,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/tools/_conda/envs/__matchms@0.23.1/lib/python3.11/site-packages/matchms/networking/networking_functions.py", line 49, in get_top_hits
r, _, v = scores.scores[:, i, score_name]
~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^
File "/usr/local/tools/_conda/envs/__matchms@0.23.1/lib/python3.11/site-packages/sparsestack/StackedSparseArray.py", line 89, in __getitem__
r, c, d = self._getitem_method(row, col, name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/tools/_conda/envs/__matchms@0.23.1/lib/python3.11/site-packages/sparsestack/StackedSparseArray.py", line 110, in _getitem_method
return self.row[idx], self.col[idx], self._slicing_data(name, idx)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/tools/_conda/envs/__matchms@0.23.1/lib/python3.11/site-packages/sparsestack/StackedSparseArray.py", line 131, in _slicing_data
return self.data[name][idx]
~~~~~~~~~^^^^^^
ValueError: no field of name CosineGreedy_score
This can be fixed by looking for the proper score name in the scores object and then passing that one.
When running the networking on newer matchms output you get the following error:
This can be fixed by looking for the proper score name in the scores object and then passing that one.