Error running Remove coordination complexes tool

[wverastegui]

Running on csv input format gives: Unable to find image 'quay.io/biocontainers/mulled-v2-56a9cd89a7bcfbe0bfc3211cebf267f621a9a328:bf898d883411de20ff5ba72fd6e7931180123cd8-0' locally bf898d883411de20ff5ba72fd6e7931180123cd8-0: Pulling from biocontainers/mulled-v2-56a9cd89a7bcfbe0bfc3211cebf267f621a9a328 fa7e54f17dc0: Already exists 4ca545ee6d5d: Already exists 2c4bff57e247: Pulling fs layer 2c4bff57e247: Download complete 2c4bff57e247: Pull complete Digest: sha256:68c7206a1b881087f5153be01c607a074641ce9288c19762cd4b9985a4d82aee Status: Downloaded newer image for quay.io/biocontainers/mulled-v2-56a9cd89a7bcfbe0bfc3211cebf267f621a9a328:bf898d883411de20ff5ba72fd6e7931180123cd8-0 OpenBLAS blas_thread_init: pthread_create failed for thread 1 of 8: Operation not permitted OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max OpenBLAS blas_thread_init: pthread_create failed for thread 2 of 8: Operation not permitted OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max OpenBLAS blas_thread_init: pthread_create failed for thread 3 of 8: Operation not permitted OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max OpenBLAS blas_thread_init: pthread_create failed for thread 4 of 8: Operation not permitted OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max OpenBLAS blas_thread_init: pthread_create failed for thread 5 of 8: Operation not permitted OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max OpenBLAS blas_thread_init: pthread_create failed for thread 6 of 8: Operation not permitted OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max OpenBLAS blas_thread_init: pthread_create failed for thread 7 of 8: Operation not permitted OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max Traceback (most recent call last): File "/mnt/volume/shared/galaxy/var/shed_tools/toolshed.g2.bx.psu.edu/repos/recetox/rem_complex/a0e07a0bc047/rem_complex/rem_complex.py", line 3, in import pandas as pd File "/usr/local/lib/python3.11/site-packages/pandas/init.py", line 16, in raise ImportError( ImportError: Unable to import required dependencies: numpy: Error importing numpy: you should not try to import numpy from its source directory; please exit the numpy source tree, and relaunch your python interpreter from there.

[wverastegui]

running on SMI and InChI input format gives: OpenBLAS blas_thread_init: pthread_create failed for thread 1 of 8: Operation not permitted OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max OpenBLAS blas_thread_init: pthread_create failed for thread 2 of 8: Operation not permitted OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max OpenBLAS blas_thread_init: pthread_create failed for thread 3 of 8: Operation not permitted OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max OpenBLAS blas_thread_init: pthread_create failed for thread 4 of 8: Operation not permitted OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max OpenBLAS blas_thread_init: pthread_create failed for thread 5 of 8: Operation not permitted OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max OpenBLAS blas_thread_init: pthread_create failed for thread 6 of 8: Operation not permitted OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max OpenBLAS blas_thread_init: pthread_create failed for thread 7 of 8: Operation not permitted OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max Traceback (most recent call last): File "/mnt/volume/shared/galaxy/var/shed_tools/toolshed.g2.bx.psu.edu/repos/recetox/rem_complex/a0e07a0bc047/rem_complex/rem_complex.py", line 3, in import pandas as pd File "/usr/local/lib/python3.11/site-packages/pandas/init.py", line 16, in raise ImportError( ImportError: Unable to import required dependencies: numpy: Error importing numpy: you should not try to import numpy from its source directory; please exit the numpy source tree, and relaunch your python interpreter from there.

[hechth]

This was closed in #453