XCMS tools for plotting EIC and Peaks

RECETOX / galaxytools

Set of Galaxy tool wrappers developed at RECETOX

MIT License

13 stars 12 forks source link

XCMS tools for plotting EIC and Peaks #523

Closed wverastegui closed 2 months ago

wverastegui commented 2 months ago

This PR contains the XCMS plotting tools for peaks and EIC.

Updated the help text
Updated the test for mzML
Renamed outputname, it inlcudes <m/z>, and
Fixed plot cutoff of the image
Updated test plots

closes https://github.com/RECETOX/galaxytools/issues/498 & https://github.com/RECETOX/galaxytools/issues/499

wverastegui commented 2 months ago

This commit fixed the issue of the left margin cutoff.

hechth commented 2 months ago

@yguitton should we put those tools rather to the other w4m XCMS tools into your repo, what do you think? @jorainer these tools add some of the plotting capabilities described in your XCMS tutorial to Galaxy. If you make it referenceable we can link it here so that people see the further functions provided by the package :)

yguitton commented 2 months ago

@yguitton should we put those tools rather to the other w4m XCMS tools into your repo, what do you think? @hechth Yes we should add that to W4M, as it really fits our users needs

hechth commented 2 months ago

@yguitton then I will close this here and open a new PR on w4m - should we make a new folder for these like xcms_plot or put them to the existing folder?