Seems like the current RT alignment step doesn't use the computed clusters for the RT correction but again does some clustering or alignment based on tolerances and only uses the sample name.
There are 2 options
read the sample name from the files so that we don't need the clustering step
actually use the clusters for the RT correction
The rt correction step is just based on establishing matching points ("clusters") between the template and the individual samples and then a smoothed curve over the differences is created and applied to the individual samples.
Seems like the current RT alignment step doesn't use the computed clusters for the RT correction but again does some clustering or alignment based on tolerances and only uses the sample name.
There are 2 options
The rt correction step is just based on establishing matching points ("clusters") between the template and the individual samples and then a smoothed curve over the differences is created and applied to the individual samples.
Steps