Closed mbwatson closed 5 years ago
danger zone
branch has sync button, along with backup and restore buttons
@xu-hao Hitting /data/sync
returns "Method Not Allowed, The method is not allowed for the requested URL" error message.
The pipeline container stays up and running.
Docker logs:
[mwatson@stage-pmd dashboard]$ docker logs pmd-pipeline
* Serving Flask app "reload" (lazy loading)
* Environment: production
WARNING: This is a development server. Do not use it in a production deployment.
Use a production WSGI server instead.
* Debug mode: off
INFO:werkzeug: * Running on http://0.0.0.0:5000/ (Press CTRL+C to quit)
executing create table "StudyPI" ("AreYouStudyPI" boolean, "userId" bigint);
executing create table "CTSA" ("CTSAhubPIFirstName" varchar, "CTSAhubPILastName" varchar, "ProposalID" bigint, "approvalfromCTSA" boolean);
executing create table "ProposalDetails" ("ProposalID" bigint, "therapeuticArea" varchar, "rareDisease" boolean, "numberSubjects" bigint, "studyPopulation" varchar, "numberSites" bigint, "numberNonUSsites" bigint, "listCountries" varchar, "numberCTSAprogHubSites" bigint);
executing create table "Submitter" ("userId" varchar, "ProposalID" bigint, "submitterFirstName" varchar, "submitterLastName" varchar, "submitterFacultyStatus" bigint, "submitterEmail" varchar, "submitterPhone" varchar, "submitterInstitution" varchar);
executing create table "ProtocolTimelines_estimated" ("ProposalID" bigint, "plannedFinalProtocol" date, "plannedFirstSiteActivated" date, "plannedSubmissionDate" date, "plannedGrantSubmissionDate" date, "actualGrantSubmissionDate" date, "plannedGrantAwardDate" date, "actualGrantAwardDate" date, "estimatedStartDateOfFunding" date);
executing create table "Proposal" ("ProposalID" bigint, "dateSubmitted" date, "proposalStatus" varchar, "HEALnetwork" boolean, "ShareThisInfo" boolean, "FullTitle" varchar, "ShortTitle" varchar, "PhaseOfStudy" varchar, "ShortDescription" varchar, "ProtocolDesign" varchar, "Objectives" varchar, "Endpoints" varchar, "StudyPopulation" varchar, "MainEntryCriteria" varchar, "PlannedSitesEnrollingParticipants" varchar, "DescriptionOfStudyIntervention" varchar, "StudyDuration" varchar, "ParticipantDuration" varchar, "DisclosureConflicts" varchar, "optStatisticalPlan" varchar, "optEnrollmentPlan" varchar);
executing create table "ProposalFunding" ("ProposalID" bigint, "submittedToNIH" boolean, "currentFunding" varchar, "newFundingStatus" varchar, "numberFundingSource" bigint, "fundingSource" varchar, "fundingMechanism" varchar, "identifyFundingMechanism" varchar, "instituteCenter" varchar, "grantApplicationNumber" varchar, "FOAnumber" varchar, "planningGrant" boolean, "largerThan500K" boolean, "amountAward" varchar, "totalBudget" varchar, "fundingPeriod" varchar, "fundingStart" date, "applicationToInstituteBusinessOfficeDate" date, "discussWithPO" boolean, "POsName" varchar, "NewOrExistingNetwork" boolean, "peerReviewDone" varchar);
executing create table "User" ("userId" varchar, "password" varchar, "loginStatus" varchar, "registerDate" date);
executing create table "Administrator" ("userId" varchar, "adminName" varchar, "adminEmail" varchar);
executing create table "TINuser" ("userId" varchar, "TINuser_fname" varchar, "TINuser_lname" varchar, "TINuser_email" varchar, "TINuserOrganization" varchar);
executing create table "AssignProposal" ("ProposalID" bigint, "assignToInstitution" varchar, "ticPOC" varchar, "ricPOC" varchar, "ncatsPOC" varchar);
executing create table "TIChealPOCs" ("ProposalID" bigint, "DukePOC" varchar, "UtahPOC" varchar, "jhuPOC" varchar);
executing create table "InitialConsultationDates" ("ProposalID" bigint, "FirstContact" date, "kickOffNeeded" boolean, "kickOffScheduled" date, "kickOffDateOccurs" date, "workComplete" date, "reportSentToPI" date);
executing create table "ConsultationRequest" ("consultationRequestID" bigint, "ProposalID" bigint, "serviceOrComprehensive" varchar);
executing create table "ServicesAdditionalInfo" ("consultationRequestID" bigint, "SAuseBefore" boolean, "CIRBfwaNumber" varchar);
executing create table "InitialConsultationSummary" ("ProposalID" bigint, "protocolReviewed" boolean, "budgetReviewed" boolean, "fundingReviewed" boolean, "CIRBdiscussed" boolean, "SAdiscussed" boolean, "EHRdiscussed" boolean, "CommunityEngagementDiscuss" boolean, "RecruitmentPlanDiscussed" boolean, "FeasibilityAssessmentDiscussed" boolean, "OtherComments" varchar);
executing create table "LettersAndSurvey" ("ProposalID" bigint, "decisionLetterSent" date, "satisfactionSurveySent" date, "LetterOfSupport" date);
executing create table "PATMeeting" ("ProposalID" bigint, "meetingDate" date, "meetingNumber" bigint, "approvedFor" varchar, "comments" varchar);
executing create table "Voter" ("userId" varchar, "ProposalID" bigint, "Role" varchar);
executing create table "PATReviewForVote" ("ProposalID" bigint, "requireVote" boolean, "vote" varchar);
executing create table "BudgetBreakOut" ("ProposalID" bigint, "siteBudget" varchar, "recruitmentBudget" varchar, "overallBudget" varchar, "budgetNotes" varchar);
executing create table "RecommendationsForPI" ("ProposalID" bigint, "protocolRecommendation" varchar, "budgetRecommendation" boolean, "fundingAssessment" varchar, "CIRBrecommendation" varchar, "SArecommendation" varchar);
executing create table "TIC_RICAssessment" ("ProposalID" bigint, "Issues" varchar, "BudgetFeasible" varchar, "TICcapacity" boolean, "undertakeAtCurrentState" varchar, "opportunityToCollaborate" varchar, "operationHypothesis" varchar);
executing create table "FinalRecommendation" ("ProposalID" bigint, "recommendation" varchar, "serviceRecommended" varchar, "IsServiceFeasible" boolean, "hoursToOperationalizeService" varchar, "howOperationalizeService" varchar);
executing create table "SiteInformation" ("ProposalID" bigint, "siteNumber" bigint, "siteName" varchar, "principleInvestigator" varchar, "studyCoordinator" varchar, "ctsaName" varchar, "ctsaPOC" varchar, "activeProtocolDate" date, "protocolVersion" varchar, "projectedEnrollmentPerMonth" bigint, "IRBOriginalApproval" date, "CTA_FE" date, "enrollmentStatus" varchar, "onHoldDate" date, "onHoldDays" bigint, "siteActivatedDate" date, "dateOfFirstConsent" date, "dateOfFirstPtEnrolled" date, "mostRecentConsent" date, "mostRecentEnrolled" date, "noOfPtsSignedConsent" bigint, "noOfPtsEnrolled_site" bigint, "noOfPtsActive_site" bigint, "noOfPtsComplete_site" bigint, "noOfPtsWithdrawn_site" bigint, "noOfCRFsCompleted_site" bigint, "percentCRFsReviewed_site" bigint, "percentCRFsIncomplete_site" bigint, "noOfUnresolvedQueries_site" bigint, "noOfSAEs_site" bigint, "noOfSignificantProtocolDeviations_site" bigint, "CTAsentdate" date, "regPacksentdate" date, "siteSelectDate" date, "notesToSite" varchar);
executing create table "StudyInformation" ("ProposalID" bigint, "studyStartDate" date, "plannedCompleteEnrollment" date, "noOfSitesActive" bigint, "noOfPtsEnrolled" bigint, "noOfPtsActive" bigint, "noOfPtsComplete" bigint, "noOfPtsWithdrawn" bigint, "noOfCRFsEnteredForStudy" bigint, "percentCRFsReviewed" bigint, "percentCRFsIncomplete" bigint, "noOfUnresolvedQueries" bigint, "noOfSignificantProtocolDeviations" bigint, "noOfSAEs" bigint, "mostRecentPatientEnrolled" date);
executing create table "SuggestedChanges" ("changeID" bigint, "ShortTitle" varchar, "plannedDateToChange" date, "changeComplete" boolean);
executing create table "UtahRecommendation" ("ProposalID" bigint, "network" varchar, "tic" varchar, "ric" varchar, "collaborativeTIC" varchar, "collaborativeTIC_roleExplain" varchar, "DCCinstitution" varchar, "CCCinstitution" varchar, "primaryStudyType" varchar, "sub_ancillaryStudy" boolean, "mainStudy" varchar, "hasSubAncillaryStudy" boolean, "sub_ancillaryStudyName" varchar, "linkedData" varchar, "studyDesign" varchar, "randomized" boolean, "randomizationUnit" varchar, "randomizationFeature" varchar, "ascertainment" varchar, "observations" varchar, "pilot_demoStudy" boolean, "pilot_or_demo" varchar, "registry" boolean, "EHRdataTransfer" boolean, "EHRdataTransfer_option" varchar, "consent" boolean, "EFIC" boolean, "IRBtype" varchar, "regulatoryClassification" varchar, "clinicalTrialsIdentifier" varchar, "dsmb_dmcUsed" boolean, "initialPlannedNumberOfSites" bigint, "finalPlannedNumberOfSites" bigint, "enrollmentGoal" varchar, "initialProjectedEnrollmentDuration" bigint, "actualEnrollment" bigint);
executing create table "Proposal_NewServiceSelection" ("ProposalID" bigint, "serviceSelection" varchar);
executing create table "Proposal_ServicesApproved" ("ProposalID" bigint, "servicesApproved" varchar);
executing create table "reviewer_organization" ("reviewer" varchar, "organization" varchar);
executing create table "name" ("table" varchar, "column" varchar, "index" varchar, "id" varchar, "description" varchar);
INFO:werkzeug:192.168.240.6 - - [21/Jun/2019 03:05:01] "GET /sync HTTP/1.0" 405 -
INFO:werkzeug:192.168.240.6 - - [21/Jun/2019 03:05:05] "GET /sync HTTP/1.0" 405 -
INFO:werkzeug:192.168.240.6 - - [21/Jun/2019 03:05:06] "GET /sync HTTP/1.0" 405 -
/data/sync