gfinak
commented
4 years ago Your first error:
Installing package(s) 'CytoML'
package �CytoML� is in use and will not be installed Installation path not writeable, unable to update packages: MASS, mgcv, nlme, survivalsuggests (amongst other things) that you don't have write permission to update your system.
Your next error:
cannot open URL 'https://bioconductor.org/packages/3.11/data/annotation/bin/windows/contrib/4.0/PACKAGES.rds': HTTP status was '404 Not Found'cannot open URLsuggests your system is somehow misconfigured.
The URL to the PACKAGES.rds file should look like:
https://bioconductor.org/packages/3.11/bioc/bin/windows/contrib/4.0/PACKAGES.rds
This is not a CytoML or cytoverse problem. This is a problem with your system.
Hello together, I would like to evaluate my Flowjo data in R, and so I came across the CytoML package.
However, I have some troubles with it. I tried to install the packages and load the libraries, but I am always getting error messages, even when I try different options.
It would be so great if you could check the code and if you would have any suggestions.
Thank you very much in advance.
Best, Christina
Option1:
package ‘glue’ successfully unpacked and MD5 sums checked cannot remove prior installation of package �glue�Problem C:\R-4.0.2\R_LIBS_USER\00LOCK\glue\libs\x64\glue.dll nach C:\R-4.0.2\R_LIBS_USER\glue\libs\x64\glue.dll zu kopieren: Permission deniedrestored �glue� The downloaded binary packages are in C:\Users\aulehner\AppData\Local\Temp\Rtmpmg0ZoC\downloaded_packages
package ‘flowWorkspace’ successfully unpacked and MD5 sums checked cannot remove prior installation of package �flowWorkspace�Problem C:\R-4.0.2\R_LIBS_USER\00LOCK\flowWorkspace\libs\x64\flowWorkspace.dll nach C:\R-4.0.2\R_LIBS_USER\flowWorkspace\libs\x64\flowWorkspace.dll zu kopieren: Permission deniedrestored �flowWorkspace� The downloaded binary packages are in C:\Users\aulehner\AppData\Local\Temp\Rtmpmg0ZoC\downloaded_packages Installation path not writeable, unable to update packages: MASS, mgcv, nlme, survival Old packages: 'glue' Update all/some/none? [a/s/n]: a cannot open URL 'https://bioconductor.org/packages/3.11/data/annotation/bin/windows/contrib/4.0/PACKAGES.rds': HTTP status was '404 Not Found'cannot open URL 'https://bioconductor.org/packages/3.11/data/annotation/bin/windows/contrib/4.0/PACKAGES.gz': HTTP status was '404 Not Found'cannot open URL 'https://bioconductor.org/packages/3.11/data/experiment/bin/windows/contrib/4.0/PACKAGES.rds': HTTP status was '404 Not Found'cannot open URL 'https://bioconductor.org/packages/3.11/data/experiment/bin/windows/contrib/4.0/PACKAGES.gz': HTTP status was '404 Not Found'cannot open URL 'https://bioconductor.org/packages/3.11/workflows/bin/windows/contrib/4.0/PACKAGES.rds': HTTP status was '404 Not Found'cannot open URL 'https://bioconductor.org/packages/3.11/workflows/bin/windows/contrib/4.0/PACKAGES.gz': HTTP status was '404 Not Found'versuche URL 'https://cran.biodisk.org/bin/windows/contrib/4.0/glue_1.4.2.zip' Content type 'application/zip' length 155551 bytes (151 KB) downloaded 151 KB
package ‘glue’ successfully unpacked and MD5 sums checked cannot remove prior installation of package �glue�Problem C:\R-4.0.2\R_LIBS_USER\00LOCK\glue\libs\x64\glue.dll nach C:\R-4.0.2\R_LIBS_USER\glue\libs\x64\glue.dll zu kopieren: Permission deniedrestored �glue� The downloaded binary packages are in C:\Users\aulehner\AppData\Local\Temp\Rtmpmg0ZoC\downloaded_packages
vignette("flowWorkspace-Introduction", "flowWorkspace")
Option 2: