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RGLab / CytoML

A GatingML Interface for Cross Platform Cytometry Data Sharing
GNU Affero General Public License v3.0
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Ellipses coordinates are not correct in Gating Set after flowJo workspace parsing - v2.9.0 #142

Closed mlamarin closed 2 years ago

mlamarin commented 2 years ago

Dear All

Basically, using the last bioconductor:devel and CytoML version 2.9.0, ellipses are wrongly located (in the FSC-A, SSC-A) space after flowJo workspace parsing.

I built theoretically a reproducible example in the GitHub project below:

https://github.com/mlamarin/cytoml_bug_flowjo_ellipse/blob/main/flowjo_ellipse_bug.R

The code was used to work correctly, at least in R_3.6.1 (ellipses gates were correctly placed) Thanks for the fantastic work you have already done.

HTH Marc

mikejiang commented 2 years ago

Thank you for reporting the bug! Looking into it.

mikejiang commented 2 years ago

addressed by https://github.com/RGLab/CytoML/pull/143

mikejiang commented 2 years ago

@mlamarin Somehow I cannot request you to review this PR, can you assign yourself and approve it?

mikejiang commented 2 years ago

Merged to master branch. Also pushed to bioconductor.