RGLab / CytoML

A GatingML Interface for Cross Platform Cytometry Data Sharing
GNU Affero General Public License v3.0
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extract inverse transform #150

Open Biomiha opened 1 year ago

Biomiha commented 1 year ago

Hi,

Is there a way of extracting the inverse tranform from a flowjo workspace when the execute = FALSE argument is used in flowjo_to_gatingset

gs <- flowjo_to_gatingset(ws, name = 4, execute = FALSE, additional.keys = NULL)

I followed this workflow: https://bioc.ism.ac.jp/packages/3.12/bioc/vignettes/CytoML/inst/doc/flowjo_to_gatingset.html#2_Advanced

gh_get_transformations(gs[[1]], channel = "B710-A") gives me the tranformations, but is there a direct way of obtaining the inverse transform? Basically, I would just like to be able to use axis_x_inverse_trans() to give me a sensible scale when plotting.

Many thanks in advance, Miha