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RGLab / CytoML

A GatingML Interface for Cross Platform Cytometry Data Sharing
GNU Affero General Public License v3.0
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space from wsp path causes flowjo_to_gatingset to fail #80

Closed mikejiang closed 4 years ago

mikejiang commented 4 years ago 
 ws <- open_flowjo_xml("~/Downloads/d d/13.02.2020.wsp")
> flowjo_to_gatingset(ws, name = 1)
 Error in (function (ws, group_id, subset, execute, path, h5_dir, includeGates,  : 
  boost::filesystem::directory_iterator::construct: No such file or directory: "/home/wjiang2/Downloads/d%20d"

Apparently the original path is treated as URL and encoded by libxml::xmlReadFile and then get passed to boost. We can try to preserve the path since URL decoding requires the extra c lib dependency.