RGLab / CytoML

A GatingML Interface for Cross Platform Cytometry Data Sharing
GNU Affero General Public License v3.0
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Error installing CytoML #90

Open choinc615 opened 4 years ago

choinc615 commented 4 years ago

Hi,

I am getting an error message as below upon trying to install CytoML by using BiocManager:install("CytoML")

Bioconductor version 3.12 (BiocManager 1.30.10), R 4.0.0 (2020-04-24) Installing package(s) 'CytoML' also installing the dependencies ‘flowStats’, ‘flowWorkspace’, ‘openCyto’, ‘ggcyto’

cannot open URL 'https://bioconductor.org/packages/3.12/bioc/bin/macosx/contrib/4.0/PACKAGES.rds': HTTP status was '404 Not Found'cannot open URL 'https://bioconductor.org/packages/3.12/bioc/bin/macosx/contrib/4.0/PACKAGES.gz': HTTP status was '404 Not Found'cannot open URL 'https://bioconductor.org/packages/3.12/data/annotation/bin/macosx/contrib/4.0/PACKAGES.rds': HTTP status was '404 Not Found'cannot open URL 'https://bioconductor.org/packages/3.12/data/annotation/bin/macosx/contrib/4.0/PACKAGES.gz': HTTP status was '404 Not Found'cannot open URL 'https://bioconductor.org/packages/3.12/data/experiment/bin/macosx/contrib/4.0/PACKAGES.rds': HTTP status was '404 Not Found'cannot open URL 'https://bioconductor.org/packages/3.12/data/experiment/bin/macosx/contrib/4.0/PACKAGES.gz': HTTP status was '404 Not Found'cannot open URL 'https://bioconductor.org/packages/3.12/workflows/bin/macosx/contrib/4.0/PACKAGES.rds': HTTP status was '404 Not Found'cannot open URL 'https://bioconductor.org/packages/3.12/workflows/bin/macosx/contrib/4.0/PACKAGES.gz': HTTP status was '404 Not Found'Packages which are only available in source form, and may need compilation of C/C++/Fortran: ‘flowWorkspace’ ‘openCyto’ ‘CytoML’

gfinak commented 4 years ago

Look here and you'll see that High Sierra binaries are not available. You should build from source.

jacobpwagner commented 4 years ago

There also haven't been any major changes to CytoML since the release of Bioconductor 3.11 a little over a week ago. There are binaries available for 3.11. Is there a reason you are using the development branch (3.12)?