Closed sofiapuvogel closed 3 years ago
Hi Sofia,
These are competitive tests, so the background is everything that is in the SingleCellAssay object, that is not in the set currently being tested. The 2015 paper has the details: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0844-5#Sec12
On Jun 2, 2021, at 11:09 AM, sofiapuvogel @.***> wrote:
Dear MAST team, I am performing GESEA with MAST, but it is not clear to me what the program uses as "background gene sets". I am following the MAIT Analysis tutorial, with min_gene_in_module <- 5. Best regards, Sofía
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Thanks!
Dear MAST team, I am performing GESEA with MAST, but it is not clear to me what the program uses as "background gene sets". I am following the MAIT Analysis tutorial, with min_gene_in_module <- 5. Best regards, Sofía