search

RGLab / QUALIFIER

Qualitiy control for gated flow cytometry data
6 stars 1 forks source link

queryStats expects tube column #28

Closed mikejiang closed 11 years ago

mikejiang commented 11 years ago

Currently the stain column is parsed from tube(or staining panel) column on the fly,which is ITN data specific design. In order to make it generic, we want to parse stain column from FCS and add it permanently to stats table during the getQAStats stage.

mikejiang commented 11 years ago

It would also be helpful to add 'isMFI' and 'isSpike' arguments to getQAStats to speed up the preprocessing in case users are only interested in proportions and counts.

mikejiang commented 11 years ago

leo, try to pull the change. and add isMFI=FALSE and isSpike=FALSE to qaPreprocess call to have a quick run.