Closed marketavlkova closed 6 years ago
You need libtool
see https://github.com/RGLab/RProtoBufLib/blob/trunk/DESCRIPTION#L12
and #2
libtool installed, but installation through both biocLite("RProtoBufLib")
and install_github("RGLab/RProtoBufLib@trunk")
still has the same errors
Since you are mac, you can manually download/install the prebuilt binary from the latest bioconductor release http://bioconductor.org/packages/3.6/bioc/html/RProtoBufLib.html. Or if you upgrade your R to 3.4.3, then biocLite
should automatically pull the binary for you.
Upgraded to R 3.4.3 and still have the same errors using biocLite
. I don't know how to install it manually using the prebuilt binary.
You need to make sure to use the latest version of Bioconductor 3.6 by biocLite("BiocUpgrade")
see details https://www.bioconductor.org/install/
I already have Bioconductor 3.6
> biocLite("BiocUpgrade")
Error: Bioconductor version 3.6 cannot be upgraded with R version 3.4.3
Ok. I don't know what was the reason for you Mac OSX not being able to pull the binary version. To do it manually, just download the package from http://bioconductor.org/packages/3.6/bioc/bin/macosx/el-capitan/contrib/3.4/RProtoBufLib_1.0.1.tgz
and run R CMD INSTALL RProtoBufLib_1.0.1.tgz
good, this worked. Thanks.
Hi, I successfully installed flowCore few day ago (using biocLite installation) to analyse data from flow cytometry. To visualize them I'd like to use ggcyto, however I had issues to install it. I tracked back that the basic dependency I need is RProtoBufLib (which is needed for flowWorkspace, which is the only dependency for ggcyto I don't have). I installed libhdf5-dev as I read in some previous thread it might help, it didn't in my case. Running the installation using:
> install_github("RGLab/RProtoBufLib@trunk")
gives fatal error because common.h file is not found or so...:
using:
> biocLite("RProtoBufLib")
fails to compile RProtoBufLib package...:
Could you help me to solve this, please?
PS: I'm using mac and R version 3.4.1