search

RGLab / flowStats

flowStats: algorithms for flow cytometry data analysis using BioConductor tools
15 stars 10 forks source link

Normalization fails when SOME samples have insufficient events #1

Open gfinak opened 11 years ago

gfinak commented 11 years ago

Normalization should proceed for all samples except those with insufficient events on certain gates. But it appears something is quite right with the logic, as the codes skips (or throws warnings) for samples where there are insufficient events to normalize in a robust manner, yet no other normalization occurs for the remaining samples.

Need to investigate and fix this.

gfinak commented 11 years ago

Not clear to me that this is really a bug. Perhaps throwing an early warning and exiting would be sufficient..