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RGLab / flowStats

flowStats: algorithms for flow cytometry data analysis using BioConductor tools
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flowStats dependency 'compositions' has been removed from CRAN #10

Closed mikejiang closed 10 years ago

mikejiang commented 10 years ago

The solution is to find out the source tree of compositions::dist and copy them to flowStats.

By removing the dependency on compositions, The following masking issues during flowStats loading can also be cleaned up.

Attaching package: ‘compositions’

The following objects are masked from ‘package:stats’:

    cor, cov, dist, var

The following objects are masked from ‘package:base’:

    %*%, scale, scale.default
gfinak commented 10 years ago

Which functions from compositions was flowStats using?

On Tue, Mar 11, 2014 at 12:26 PM, Mike Jiang notifications@github.com wrote:

Closed #10 https://github.com/RGLab/flowStats/issues/10 via f043f29https://github.com/RGLab/flowStats/commit/f043f299c5a845ae6a7fde17f65a095ee1ab2fa8

.

Reply to this email directly or view it on GitHubhttps://github.com/RGLab/flowStats/issues/10 .

Greg Finak, PhD Staff Scientist Vaccine and Infectious Disease Division Fred Hutchinson Cancer Research Center Seattle, WA 98109

(206)667-3116 gfinak@fhcrc.org

mikejiang commented 10 years ago

compositions::dist, and it is actually unnecessary. see the explanation here